FC931889

Overview
NameFC931889
Unique NameFC931889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931889_ssr16 microsatellite FC931889_ssr16:16..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6635 contig Ccv1_Contig6635:243..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931889 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.920e-34
Identity = 70/115 (60.87%), Postives = 92/115 (80.00%), Query Frame = 1
Query:  334 QFSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALS-SGYQRFSLSTIRLLMFLFRNPHDSL-RIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIG 672
            QFS+Y    F P THP+++RSFE  DR+RSGF++E+EL+QALS SGY   S  TIRLL+F+++ P DSL R+GPKE+ +LW+CL QWRAIF RYDRDRSGK++  +LRDA Y++G
Sbjct:   41 QFSSYS-GMFSPETHPEIVRSFESADRNRSGFLEESELRQALSLSGYDGISNRTIRLLLFIYKIPVDSLLRLGPKEYVELWNCLAQWRAIFNRYDRDRSGKMNSTQLRDAFYNLG 154          
BLAST of FC931889 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.305e-29
Identity = 64/114 (56.14%), Postives = 84/114 (73.68%), Query Frame = 1
Query:  337 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYA 678
            F++   SAFPPGT P+++  F+  DRD SGFID+ ELQ ALSS  Q FS+ T+ LLM+LF N  +  +IGPKEF  L+  L  WR+IFER+D+DRSG+ID  ELRDAL S+G++
Sbjct:  153 FASLVPSAFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTN-SNVRKIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDALMSLGFS 265          
BLAST of FC931889 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 62/114 (54.39%), Postives = 85/114 (74.56%), Query Frame = 1
Query:  337 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYA 678
            F++   S F PGT P+++  F+  D+D SGFID+ ELQ ALSS  QRFS+ T+ LLM+LF N  ++++IGPKEF  L+  L  WR+IFER D+DRSG+ID+ ELRDAL S+G++
Sbjct:  172 FASLIPSGFAPGTDPNIVACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTN-SNAMKIGPKEFTALFYSLQNWRSIFERSDKDRSGRIDVNELRDALLSLGFS 284          
BLAST of FC931889 vs. ExPASy Swiss-Prot
Match: PEF1_XENLA (Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 48/119 (40.34%), Postives = 69/119 (57.98%), Query Frame = 1
Query:  334 QFSAYGHSA----FPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGY 675
            Q  +YG  A     PPG  P+    F+ VD D SG+I   EL+QAL ++ +  F+  T  ++M +F +  +S RI    F+ LW  + QWR +F++YDRDRSG I+  EL  AL  +GY
Sbjct:   97 QHGSYGQGAPAGNIPPGVDPEAFSWFQTVDTDHSGYISLKELKQALVNTNWSSFNDETCTMMMNMF-DKSNSGRIDMFGFSALWRFIQQWRNLFQQYDRDRSGSINQGELHQALCQMGY 214          
BLAST of FC931889 vs. ExPASy Swiss-Prot
Match: PEF1_MOUSE (Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  346 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGY 675
            YG    PP   P+    F+ VD D SG+I   EL+QAL +S +  F+  T  +++ +F +   S RI    F+ LW  L QWR +F++YDRDRSG I   EL+ AL  +GY
Sbjct:   97 YGQGGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMF-DKTKSGRIDVAGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQMGY 206          
BLAST of FC931889 vs. ExPASy Swiss-Prot
Match: PEF1_HUMAN (Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  346 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGY 675
            YG    PP   P+    F+ VD D SG+I   EL+QAL +  +  F+  T  +++ +F +   S RI    F+ LW  + QW+ +F++YDRDRSG I   EL+ AL  +GY
Sbjct:  106 YGQGGAPPNVDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMF-DKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGY 215          
BLAST of FC931889 vs. ExPASy Swiss-Prot
Match: PEF1_RAT (Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  346 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGY 675
            YG    PP   P+    F+ VD D SG+I   EL+QAL +S +  F+  T  +++ +F       RI    F+ LW  L QW+ +F++YDRD SG I   EL+ AL  +GY
Sbjct:  105 YGQGGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKTG-RIDVVGFSALWKFLQQWKNLFQQYDRDHSGSISSTELQQALSQMGY 214          
BLAST of FC931889 vs. ExPASy Swiss-Prot
Match: PEF1_DANRE (Peflin OS=Danio rerio GN=pef1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  364 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGY 675
            PPG +P+  + F  VD D+SG+I+  EL+QAL +     F+  T  +++ +F +   S R+    F+ LW+ L QWRA F+++DRDRSG I+  E+  AL  +GY
Sbjct:   98 PPGVNPEAYQWFSTVDSDQSGYINAKELKQALMNFNNSSFNDETCIMMLNMF-DKTKSGRVDVFGFSALWTFLQQWRAAFQQFDRDRSGSINTNEMHQALSQMGY 201          
BLAST of FC931889 vs. ExPASy Swiss-Prot
Match: PDCD6_MOUSE (Programmed cell death protein 6 OS=Mus musculus GN=Pdcd6 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1
Query:  397 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGY 675
            F+ VD+DRSG I +NELQQALS+G +  F+  T+R ++ +F +  +   +   EF  +W  +  W+ +F  YDRD SG ID  EL+ AL   GY
Sbjct:   32 FQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGY 124          
BLAST of FC931889 vs. ExPASy Swiss-Prot
Match: PDCD6_HUMAN (Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  397 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFRNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGY 675
            F+ VD+DRSG I + ELQQALS+G +  F+  T+R ++ +F +  +   +   EF  +W  +  W+ +F  YDRD SG ID  EL+ AL   GY
Sbjct:   32 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMF-DRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGY 124          
The following BLAST results are available for this feature:
BLAST of FC931889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CML48_ARATH3.920e-3460.87Probable calcium-binding protein CML48 OS=Arabidop... [more]
CML49_ARATH1.305e-2956.14Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH1.884e-2854.39Probable calcium-binding protein CML50 OS=Arabidop... [more]
PEF1_XENLA1.072e-1540.34Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1[more]
PEF1_MOUSE1.072e-1541.44Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1[more]
PEF1_HUMAN1.549e-1438.74Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1[more]
PEF1_RAT2.023e-1438.74Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1[more]
PEF1_DANRE4.506e-1440.00Peflin OS=Danio rerio GN=pef1 PE=2 SV=1[more]
PDCD6_MOUSE7.686e-1442.55Programmed cell death protein 6 OS=Mus musculus GN... [more]
PDCD6_HUMAN3.814e-1341.49Programmed cell death protein 6 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC34202C07EF PostHarveN Citrus clementina cDNA clone C34202C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931889 ID=FC931889; Name=FC931889; organism=Citrus clementina; type=EST; length=678bp
GAGGAATTCCAGAAGTCTCTCTCTCTCACTTCTCACGTTTGTGATCTTGT
TCTGCTTCTGCTCATAGCGTTGACGTTTTAATTTTTGTAAGTAAATTATT
AAAAAATCCGGTACCAAATCACAAATCATAATCACCATCAGCATCATTGA
ATGTCAAATTACAGCGGATCCTACTCTTCATCTCAATCCTACGCGCCCTC
TGCGCCTTCGCTGCCGGAGACCCACAACAACTCCTCTTACAATAACTCAT
CTTCGGCTCAAAGCTATTATGCCCAGCCTCCTCCGCCTCCGCCGCCGTCG
CAGCAGCAGCCGTACCCCGCGCCGAGTTACGGGCAGTTTTCGGCATATGG
GCACTCCGCGTTTCCGCCGGGGACCCACCCAGATGTGATAAGGAGCTTTG
AAATGGTTGATAGAGATAGAAGTGGGTTTATTGATGAGAATGAGTTGCAG
CAAGCACTTTCTTCTGGGTACCAGAGGTTTAGTCTCAGTACTATTAGATT
GCTCATGTTTCTTTTCAGGAATCCCCATGATTCGTTGAGAATTGGGCCTA
AAGAATTTGCTGATTTGTGGAGTTGCCTTGGTCAATGGCGCGCTATATTT
GAGAGATATGATCGAGACAGAAGTGGGAAAATTGATCTGATGGAATTGAG
GGATGCTCTCTACAGCATTGGGTATGCA
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