FC931898

Overview
NameFC931898
Unique NameFC931898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14478 contig Ccv1_Contig14478:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931898 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica GN=GSTZ5 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.464e-76
Identity = 135/212 (63.68%), Postives = 168/212 (79.25%), Query Frame = 3
Query:   84 ATTAQENLPPPLDSKAELPPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELVSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELKQL 713
            A++ +E LPP L S +E PPLFDGT RLY++Y CP+AQRAWI RNYKGLQDKIK+V ++L DRPAWYKEKVYP NK+P+LEHN +V GESLDL+KY+D+NFEGP+LLPDD EK++FA+EL+++ D F    Y+S   KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT GRP L  +IEE+ ++
Sbjct:    9 ASSEKEVLPPSLTSSSEPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIKIVAIDLADRPAWYKEKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKI 220          
BLAST of FC931898 vs. ExPASy Swiss-Prot
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica GN=GSTZ5 PE=1 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.464e-76
Identity = 135/212 (63.68%), Postives = 168/212 (79.25%), Query Frame = 3
Query:   84 ATTAQENLPPPLDSKAELPPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELVSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELKQL 713
            A++ +E LPP L S +E PPLFDGT RLY++Y CP+AQRAWI RNYKGLQDKIK+V ++L DRPAWYKEKVYP NK+P+LEHN +V GESLDL+KY+D+NFEGP+LLPDD EK++FA+EL+++ D F    Y+S   KGD   +A  A D +E AL KF+DGPFFLGQFS VDIAY+PF+ERFQIF S    YDIT GRP L  +IEE+ ++
Sbjct:    9 ASSEKEVLPPSLTSSSEPPPLFDGTTRLYVAYHCPYAQRAWIARNYKGLQDKIKIVAIDLADRPAWYKEKVYPENKVPSLEHNNQVKGESLDLVKYIDTNFEGPALLPDDSEKQQFAEELLAYTDAFNKASYSSIVAKGDVCDEAVAALDKIEAALSKFNDGPFFLGQFSLVDIAYVPFIERFQIFFSGIKNYDITKGRPNLQKFIEEVNKI 220          
BLAST of FC931898 vs. ExPASy Swiss-Prot
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica GN=Os03g0283200 PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.709e-70
Identity = 126/212 (59.43%), Postives = 163/212 (76.89%), Query Frame = 3
Query:   87 TTAQENLPPPLDSKAELPPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELVSHIDTFTNDVYTSF--KGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELKQLD 716
            ++ +E LP  L S +E P LFDGT RLY+ Y CPFAQRAWI RN+KGLQDKI+LV ++LQD+PAWYKEKVY    +P+LEHNGK++GESLDLIKY+DS+FEGP+LLP+DPEKR+FADEL+++ + FT  +Y+    K D + +   A D +E AL KF DGPFFLGQFS VDIAY+  +ER QI+ S   KY+IT GRP L  +IEE+ +++
Sbjct:    9 SSGKEALPAALGSASEPPRLFDGTTRLYICYFCPFAQRAWIIRNFKGLQDKIELVGIDLQDKPAWYKEKVYEQGTVPSLEHNGKIMGESLDLIKYIDSHFEGPALLPEDPEKRQFADELIAYANAFTKALYSPLISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLVDIAYVTIIERIQIYYSHIRKYEITNGRPNLEKFIEEINRIE 220          
BLAST of FC931898 vs. ExPASy Swiss-Prot
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.041e-64
Identity = 115/213 (53.99%), Postives = 156/213 (73.24%), Query Frame = 3
Query:   84 ATTAQENLPPPLDSKAELPPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELVSHIDTFTNDVYTSFKGDPA--KQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELKQLD 716
            +++ +E+LPP L S ++ PP+FDGT RLY+ Y CPFAQRAW+TRN KGLQDK++LV ++LQD+PAWYK+KVY    +P+LEH+ +V GESLDLI+Y+DSNF+GP+LLP+D  KR+FADEL +  + FT  +Y+      A   +   A D LE  L KFDDGPFFLGQFS  D+AY+  +ER QI+ S    YDI  GRP L  +I+E+ +++
Sbjct:    8 SSSVKESLPPALGSTSQPPPVFDGTTRLYICYFCPFAQRAWVTRNLKGLQDKMELVAIDLQDKPAWYKDKVYAQGTVPSLEHDSEVRGESLDLIRYIDSNFDGPALLPEDAAKRQFADELFASANAFTKALYSPLLSHAAVSDEVVAALDKLEADLSKFDDGPFFLGQFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIE 220          
BLAST of FC931898 vs. ExPASy Swiss-Prot
Match: GSTO1_HUMAN (Glutathione S-transferase omega-1 OS=Homo sapiens GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.584e-12
Identity = 56/198 (28.28%), Postives = 96/198 (48.48%), Query Frame = 3
Query:  141 PLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHN-GKVIGESLDLIKYVDSNFEGPSLLPDDPEKR---KFADELVSHIDTFTND-VYTSFKGDPA---KQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELKQ 710
            P+ +G+ R+Y    CPFA+R  +    KG++ ++  + +NL+++P W+ +K  P   +P LE++ G++I ES    +Y+D  + G  LLPDDP ++   K   EL S + +     + +  K D A   ++    F  LE+ L       F     S +D    P+ ER +     E         PKL  W+  +K+
Sbjct:   18 PVPEGSIRIYSMRFCPFAERTRLVLKAKGIRHEV--ININLKNKPEWFFKK-NPFGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMILELFSKVPSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWPWFERLEAMKLNE----CVDHTPKLKLWMAAMKE 208          
BLAST of FC931898 vs. ExPASy Swiss-Prot
Match: GSTO1_MOUSE (Glutathione S-transferase omega-1 OS=Mus musculus GN=Gsto1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 58/198 (29.29%), Postives = 97/198 (48.99%), Query Frame = 3
Query:  141 PLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHN-GKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELVSHIDTFTNDVYTSFKGDPAKQAGPAF-DYLEKALDKFDDG----PFFLG--QFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELKQ 710
            P+ +G  R+Y    CPFAQR  +    KG++ ++  + +NL+++P W+ EK  P+  +P LE++ G ++ ES+   +Y+D  +    L PDDP K K   ++     +    +  SF     K+  P   + LE    K ++G      FLG    S VD    P+ +R +     E K +  A  PKL  W+  ++Q
Sbjct:   18 PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEV--ININLKNKPEWFFEK-NPLGLVPVLENSQGHLVTESVITCEYLDEAYPEKKLFPDDPYK-KARQKMTLESFSKVPPLIASFVRSKRKEDSPNLREALENEFKKLEEGMDNYKSFLGGDSPSMVDYLTWPWFQRLEAL---ELK-ECLAHTPKLKLWMAAMQQ 207          
BLAST of FC931898 vs. ExPASy Swiss-Prot
Match: GSTO1_PIG (Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 58/193 (30.05%), Postives = 92/193 (47.67%), Query Frame = 3
Query:  141 PLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHN-GKVIGESLDLIKYVDSNFEGPSLLPDDPEKR---KFADELVSHID----TFTNDVYTSFKGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWI 695
            P+ +G  R+Y    CPFAQR  +  N KG++ ++  + +NL+++P W+ +K  P   +P LE++ G++I ES    +Y+D  + G  LLPDDP ++   K   EL S +      F      +      ++    F  LE+ L K     F     S +D    P+ ER +     E   D T   PKL  W+
Sbjct:   18 PVPEGLIRVYSMRFCPFAQRTLLVLNAKGIRHQV--ININLKNKPEWFFQK-NPSGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMVFELSSKVPPLLIRFIRRENEADCSGLKEELRKEFSKLEEVLTKKKTTYFGGSSLSMIDYLIWPWFERLEALELNEC-IDHT---PKLKLWM 203          
BLAST of FC931898 vs. ExPASy Swiss-Prot
Match: GSTO1_CAEEL (Glutathione transferase omega-1 OS=Caenorhabditis elegans GN=gsto-1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 62/206 (30.10%), Postives = 95/206 (46.12%), Query Frame = 3
Query:  138 PPLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDP----EKRKFADEL--VSHIDTFTNDVYTSFKGDPAKQAGPAFDYLEKALDKFDDGPFFLGQFSQVDIAYIPFVERFQIFLSEEFKYDITA-------GRPKLAAWIEELKQLD 716
            PPL  G+ R+Y    CP+A+RA +    KG++ ++  V LN+ D+  WY  K Y   K PA+EHNGKV+ ES  + +Y+D  F    +LP DP    +++  AD L  V+H       V         KQ    F+ L++A +   +  +   Q    D    PF E+     S +   D+           PKL  W +++   D
Sbjct:   18 PPLSKGSFRVYNMRFCPWAERAMLYVAAKGIEAEV--VNLNVTDKLEWYWTKHYQ-GKAPAVEHNGKVVIESGFIPEYLDDAFPETRILPTDPYEKVQQKLLADRLTAVAHAVPLLFAVMRDRTLKDEKQR-KVFEVLKQAENLLANDFYAGSQPGYPDYLSFPFFEKIWWSASLDGVVDLPTIEFPGEEEYPKLTKWFQKMISSD 219          
BLAST of FC931898 vs. ExPASy Swiss-Prot
Match: GSTO1_RAT (Glutathione S-transferase omega-1 OS=Rattus norvegicus GN=Gsto1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 60/202 (29.70%), Postives = 98/202 (48.51%), Query Frame = 3
Query:  141 PLFDGTPRLYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEH-NGKVIGESLDLIKYVDSNFEGPSLLPDDPEKR---KFADELVSHIDTFTNDVYTSFKGDPAKQAGPAF-DYLEKALDKFDDG------PFFLG-QFSQVDIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELKQ 710
            P+ +G  R+Y    CPFAQR  +    KG++ +I  + +NL+++P W+ EK  P   +P LE+  G +I ES+   +Y+D  +    L PDDP ++   K   EL S + +    + TSF     K+  P   + L+K   K ++        FF G   S +D    P+ +R +     E   D T   PKL  W+  +++
Sbjct:   18 PVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEI--ININLKNKPEWFFEK-NPFGLVPVLENTQGHLITESVITCEYLDEAYPEKKLFPDDPYEKACQKMTFELFSKVPS----LVTSFIRAKRKEDHPGIKEELKKEFSKLEEAMANKRTAFFGGNSLSMIDYLIWPWFQRLEALELNEC-IDHT---PKLKLWMATMQE 208          
BLAST of FC931898 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 59/190 (31.05%), Postives = 93/190 (48.95%), Query Frame = 3
Query:  165 LYMSYSCPFAQRAWITRNYKGLQDKIKLVPLNLQDRPAWYKEKVYPVNKIPALEHNGKVIGESLDLIKYVDSNFEGPSLLPDDPEKRKFADELVSHIDTFTNDVYTSF--KGDPAKQA-GPAFDYLEKALDKFDDGPFFLG-QFSQVDIA------YIPFVERFQ-IFLSEEFKYDITAGRPKLAAWIEE 701
            L + YS PF+ R       KG+  K + +  +LQ++     +      KIP L HNGK I ES+ +++Y+D  FEGPS+LP DP  R  A     +++     V+ SF  KG+  ++A   A++ L+   ++F D   F+G +F   DI       Y+  +E    I L+   K+      P   AW +E
Sbjct:    7 LGLRYS-PFSHRVEWALKIKGV--KYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAFEGPSILPKDPYDRALARFWAKYVEDKGAAVWKSFFSKGEEQEKAKEEAYEMLKILDNEFKDKKCFVGDKFGFADIVANGAALYLGILEEVSGIVLATSEKF------PNFCAWRDE 187          
The following BLAST results are available for this feature:
BLAST of FC931898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
IN21B_ORYSJ3.464e-7663.68Protein IN2-1 homolog B OS=Oryza sativa subsp. jap... [more]
IN21B_ORYSI3.464e-7663.68Protein IN2-1 homolog B OS=Oryza sativa subsp. ind... [more]
IN21A_ORYSJ3.709e-7059.43Protein IN2-1 homolog A OS=Oryza sativa subsp. jap... [more]
IN21_MAIZE3.041e-6453.99Protein IN2-1 OS=Zea mays GN=IN2-1 PE=2 SV=1[more]
GSTO1_HUMAN1.584e-1228.28Glutathione S-transferase omega-1 OS=Homo sapiens ... [more]
GSTO1_MOUSE2.069e-1229.29Glutathione S-transferase omega-1 OS=Mus musculus ... [more]
GSTO1_PIG4.609e-1230.05Glutathione S-transferase omega-1 OS=Sus scrofa GN... [more]
GSTO1_CAEEL4.609e-1230.10Glutathione transferase omega-1 OS=Caenorhabditis ... [more]
GSTO1_RAT7.861e-1229.70Glutathione S-transferase omega-1 OS=Rattus norveg... [more]
GSTX1_SOLTU8.691e-1131.05Probable glutathione S-transferase OS=Solanum tube... [more]
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Properties
Property NameValue
Genbank descriptionC34202D04EF PostHarveN Citrus clementina cDNA clone C34202D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931898 ID=FC931898; Name=FC931898; organism=Citrus clementina; type=EST; length=718bp
GACATTTCGGTATCAGGTAACTTTCTTCTTCAAAGCAAAAGAAAAGCTTT
CAGGAAACCTCTAGAGTCTTACCTTCCTCAATGGCAACCACAGCGCAAGA
GAATCTTCCTCCACCGTTGGATTCGAAGGCCGAGCTACCACCTCTGTTCG
ATGGAACTCCCAGGTTGTACATGTCTTACTCGTGCCCATTTGCTCAGCGT
GCGTGGATCACCAGGAACTACAAGGGATTACAAGACAAGATTAAGTTAGT
TCCACTGAACCTCCAAGATAGGCCCGCTTGGTACAAGGAGAAGGTTTATC
CTGTTAACAAGATTCCAGCACTGGAGCACAATGGCAAAGTTATTGGAGAA
TCTCTTGATTTGATTAAATATGTTGACAGCAATTTTGAAGGGCCTTCACT
TTTACCTGATGATCCTGAGAAACGAAAGTTTGCTGATGAACTGGTTTCCC
ACATCGATACCTTCACCAACGATGTGTATACTTCATTCAAAGGAGACCCA
GCAAAACAAGCTGGTCCTGCTTTTGATTACTTAGAGAAGGCCCTTGATAA
ATTTGATGATGGCCCGTTCTTCCTTGGACAGTTCAGTCAGGTGGACATAG
CCTATATTCCATTTGTTGAGAGATTCCAGATCTTCTTATCAGAAGAATTT
AAGTATGACATCACTGCAGGCAGGCCTAAACTGGCAGCATGGATTGAGGA
GTTGAAACAGCTCGATGC
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