FC931899

Overview
NameFC931899
Unique NameFC931899
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15408 contig Ccv1_Contig15408:1..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.605e-72
Identity = 137/168 (81.55%), Postives = 149/168 (88.69%), Query Frame = 2
Query:  119 MALQLWETLKEAITAYTGLSPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIK 622
            M  Q+WETLKE ITAYTGLSPAAFFTV+AL +A+Y V+SG F S + H + RS E + Q EPLPPPVQLGEITEEELK YDGSDSKKPLLMAIK QIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSF ++DLTGDISGLG FELEALQDWEYKFMSKYVKVG+I+
Sbjct:    1 MVQQIWETLKETITAYTGLSPAAFFTVLALAFAVYQVVSGFFVSPEVH-RPRSLEVQPQSEPLPPPVQLGEITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGTIQ 167          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 3.892e-68
Identity = 128/171 (74.85%), Postives = 144/171 (84.21%), Query Frame = 2
Query:  119 MALQLWETLKEAITAYTGLSPAAFFTVVALLWAIYYVLSGMFGS---SDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIK 622
            MAL+LW+TLKEAI AYTGLSP  FFT +AL +AIY V+SG F S     N HQ+     +E+  P+P PVQ+GEITEEELKQYDGSD +KPLLMAIK QIYDV+QSRMFYGPGGPYALFAGKDASRALAKMSF EKDLT D+SGLGPFEL+ALQDWEYKFMSKY KVG++K
Sbjct:    1 MALELWQTLKEAIHAYTGLSPVVFFTALALAFAIYQVISGWFASPFDDVNRHQRARSLAQEEEPPIPQPVQVGEITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGTVK 171          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 2
Query:  329 EITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSIKS 625
            E T E+L QY+G+D  KP+ +AIK +++DV+  + FYG GG Y++FAGKDASRAL KMS  E+D++  + GL   E+  L DWE KF +KY  VG + S
Sbjct:    2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS 100          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.364e-19
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 2
Query:  311 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVGSIKSTVPVTDGA 649
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS    DLT DISGL   ELEAL D +   + +KY  VG     +   DG+
Sbjct:   41 PPVRL--FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.825e-18
Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  311 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVGSIKSTVPVTDGA 649
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS    DLT D +GL   ELEAL D +   + +KY  VG     +   DG+
Sbjct:   41 PPVRL--FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVGYTARRILNEDGS 152          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.127e-17
Identity = 48/111 (43.24%), Postives = 68/111 (61.26%), Query Frame = 2
Query:  299 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 619
            EP P P ++  + T  EL++YDG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA     +   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   61 EPPPLPRLKPRDFTPAELRRYDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 170          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: PGRC1_PIG (Membrane-associated progesterone receptor component 1 OS=Sus scrofa GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.084e-17
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  176 SPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 619
            SP     +   ++ +Y ++ G         Q  + + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA     +   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   28 SPLNLLLLGLCIFLLYKIVRG--------DQPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVGKL 169          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.084e-17
Identity = 50/151 (33.11%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  176 SPAAFFTVVALLWAIYYVLSGMFGSSDNHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 619
            SP     +   ++ +Y ++ G         Q  + + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA     +   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   28 SPLNLLLLGLCIFLLYKIVRG--------DQPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 169          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.084e-17
Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = 2
Query:  311 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVGSIKSTVPVTDGA 649
            PPV+L   TEEEL +Y G +  +P+ MA+K  ++DV+  + FYG G PY    GKD++R +AKMS    DLT D +GL   ELE+L D +   + +KY  VG     +   DG+
Sbjct:   39 PPVRL--FTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVGYTARRILNEDGS 150          
BLAST of FC931899 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 6.967e-17
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 2
Query:  299 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFGE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVGSI 619
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA     +   KD   D+S L P + E L DW+ +F  KY  VG +
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVGKL 170          
The following BLAST results are available for this feature:
BLAST of FC931899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MSBP2_ARATH2.605e-7281.55Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
MSBP1_ARATH3.892e-6874.85Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
SBP3_ARATH2.920e-2350.51Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
NENF_RAT4.364e-1945.61Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
NENF_MOUSE4.825e-1843.86Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
PGRC1_RAT3.127e-1743.24Membrane-associated progesterone receptor componen... [more]
PGRC1_PIG4.084e-1733.11Membrane-associated progesterone receptor componen... [more]
PGRC1_BOVIN4.084e-1733.11Membrane-associated progesterone receptor componen... [more]
NENF_BOVIN4.084e-1742.11Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
PGRC1_MOUSE6.967e-1742.34Membrane-associated progesterone receptor componen... [more]

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Properties
Property NameValue
Genbank descriptionC34202D05EF PostHarveN Citrus clementina cDNA clone C34202D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931899 ID=FC931899; Name=FC931899; organism=Citrus clementina; type=EST; length=659bp
GAAACAGCGAGACTTTAACAGTAGCAACAATTTTCCGCCAATTTAAGACC
AAACCCCTGCAGACTCTGAGTGGATAATACCAAAGGGGACCGGGGAAAAA
AAAATCTTGACCTCCGTGATGGCTCTGCAACTATGGGAGACTCTAAAGGA
GGCGATAACAGCGTACACGGGGCTCTCCCCGGCGGCGTTTTTTACAGTTG
TTGCGTTGCTGTGGGCCATATACTATGTTCTGTCGGGAATGTTTGGTTCG
TCCGATAATCATCATCAGCAGAGATCGAGGGAGTACGAGGAACAGATGGA
GCCTCTGCCACCGCCTGTTCAGCTAGGCGAGATTACCGAGGAGGAGCTCA
AACAGTACGATGGCTCCGATTCCAAAAAGCCCCTTCTCATGGCCATCAAG
AGCCAGATCTACGATGTCTCTCAGAGCAGGATGTTTTATGGACCTGGTGG
GCCATATGCGTTGTTTGCTGGAAAGGATGCTAGCAGGGCCCTTGCCAAGA
TGTCTTTTGGGGAAAAAGATTTAACTGGTGATATCTCTGGTCTTGGTCCA
TTTGAGTTGGAGGCATTGCAGGACTGGGAGTATAAGTTCATGAGCAAGTA
TGTTAAGGTTGGATCTATCAAGTCGACAGTTCCAGTAACAGATGGAGCCT
CCTCTGGTG
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