FC931902

Overview
NameFC931902
Unique NameFC931902
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931902_ssr559 microsatellite FC931902_ssr559:559..570. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14471 contig Ccv1_Contig14471:6..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931902 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 7.439e-87
Identity = 155/226 (68.58%), Postives = 188/226 (83.19%), Query Frame = 2
Query:   44 SNKQVILSNYVTGFPKESDMKIITGSINLKVPGGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVA-SFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHL-IKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLRNKFGFDDAFNYKKEPDLDAALKRCFPEXIDIY 715
            +NKQVI  ++V+GFPKESD    T ++ L+VP GSK +VL+KNLYLSCDPYMR RM K D  S +A ++ PG+P+ GYGVS+V++S HP+YKK DL+WG+  WEEYS+I    H+  KI  T+VPLSYYTG+LGMPG+TAY G YE+CSPKKGE VYVSAASGAVGQLVGQFAK++GCYVVGSAGSKEKV+LL+ KFGFDDAFNYK+E DL AALKRCFP+ ID+Y
Sbjct:    3 TNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSK-SVLVKNLYLSCDPYMRSRMGKPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPKGIDMY 227          
BLAST of FC931902 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.646e-84
Identity = 153/228 (67.11%), Postives = 186/228 (81.58%), Query Frame = 2
Query:   44 SNKQVILSNYVTGFPKESDMKIITGSINLKVPGGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVA---SFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHL-IKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLRNKFGFDDAFNYKKEPDLDAALKRCFPEXIDIY 715
            +NKQVIL +YV+GFP ESD    T ++ L+VP G+ ++VL+KNLYLSCDPYMR RM K D PS  A   ++ PG+P+ GYGVS++++S HP+YKK DL+WG+ +WEEYS+I    H   KI  T+VPLSYYTG+LGMPG+TAY G YE+CSPK+GE VYVSAASGAVGQLVGQ AK++GCYVVGSAGSKEKV+LL+ KFGFDDAFNYK+E DL AALKRCFP  IDIY
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGT-NSVLVKNLYLSCDPYMRIRMGKPD-PSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIY 229          
BLAST of FC931902 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.796e-40
Identity = 100/225 (44.44%), Postives = 134/225 (59.56%), Query Frame = 2
Query:   44 SNKQVILSNYVTGFPKESDMKIITGSINLKVPGGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVL-DSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLRNKFGFDDAFNYKKEPDLDAALKRCFPEXIDIY 715
            S +Q+ L+    G P   D +  T    + VP   +  VL+K LY+S DPYMRGRM   D  S+V  F   + LSG  +++V+ D  H   KK D+V G  SW+E+S + S   L KI  +  P S Y GILGM GLTAY GL ++  PK+GE V VS A+GAVG  VGQ AK+ G  VVG AGS EK++ L+ +  FD+A NYK   D+  AL+   P+ +D+Y
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFET----IPVPEPKQGEVLVKTLYVSVDPYMRGRMQ--DTKSYVEPFALDKALSGGVIAEVVSDGNH--LKKGDIVIGNLSWQEFSAV-SESALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAINYKTADDIQKALQNACPDGVDVY 219          
BLAST of FC931902 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.577e-36
Identity = 90/229 (39.30%), Postives = 131/229 (57.21%), Query Frame = 2
Query:   29 GEEAVSNKQVILSNYVTGFPKESDMKIITGSINLKVPGGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLRNKFGFDDAFNYKKEPDLDAALKRCFPEXIDIY 715
            G++   N++ +L++   G P   + ++    +    PG  +  VLL+ +YLS DPYMRGRMS  D+PS+    + G  + G  VS+V++S HP+Y+  D V G + W++Y  I S   L+K+ D     S+  G+LGMPG TAY GL ++  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  EK        GFD   ++  +   +   K C P+ IDIY
Sbjct:    2 GQQKQRNRRWVLASRPHGAPVPENFRLEEDDV--ATPGEGQ--VLLRTVYLSLDPYMRGRMS--DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYD-ISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKAC-PKGIDIY 222          
BLAST of FC931902 vs. ExPASy Swiss-Prot
Match: PTGR1_RABIT (Prostaglandin reductase 1 OS=Oryctolagus cuniculus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.020e-35
Identity = 93/228 (40.79%), Postives = 132/228 (57.89%), Query Frame = 2
Query:   41 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPGGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDT---NVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLRNKFGFDDAFNYKKEPDLDAALKRCFPEXIDIY 715
            V  K   L  +  G P +SD ++ T    +++P  +   VLL+ L+LS DPYMR    +L +         G+ + G  V++V++S +P +    LV   + W  +S I   Q L K+L      +PLS   G +GMPG+TAY GL E+C  K G+ V V+AA+GAVG +VGQ AK+ GC VVG+AGS+EKV+ L+ K GFD AFNYK    L+  LK+  P+  D Y
Sbjct:    2 VRAKNWTLKKHFHGHPTDSDFELKT----VELPPLNNGEVLLEALFLSVDPYMRLGSKRLKE---------GDTMMGQQVARVVESKNPAWPVGTLVLAHSGWASHS-ISDGQQLEKLLTEWPDTLPLSLALGTVGMPGITAYFGLLEICGAKSGDTVLVNAAAGAVGAVVGQIAKIKGCRVVGAAGSEEKVDYLK-KIGFDFAFNYKTVKSLEETLKKAAPDGYDCY 214          
BLAST of FC931902 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.472e-34
Identity = 96/240 (40.00%), Postives = 130/240 (54.17%), Query Frame = 2
Query:   41 VSNKQVILSNYV---TGFP--------KESDMKIITGSINLKVPGGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDTN----VPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLRNKFGFDDAFNYKKEPDLDAALKRCFPEXIDIY 715
            VSN  VI+  Y+    G+P        ++ +  +    ++ + P      VLLKN+Y S DPY+R RM      S++     G+P     V+KV+ ST   YK    V  ++ WEEY+ + S Q L  +   N    +PL  + G LGMP  TAY GL  +  PK GE +Y+SAASGAVGQ+ GQ AK +G +VVGS GS EK  +  +  G+D  FNYKKE     AL R  P+ IDIY
Sbjct:    2 VSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDEETP------VLLKNIYTSVDPYLRMRMQSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFV-SKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFKICLDS-GYDSVFNYKKESPF-KALPRLCPKGIDIY 232          
BLAST of FC931902 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.472e-34
Identity = 94/228 (41.23%), Postives = 127/228 (55.70%), Query Frame = 2
Query:   41 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPGGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKI---LDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLRNKFGFDDAFNYKKEPDLDAALKRCFPEXIDIY 715
            V  K   L  +  GFP + + ++ T     ++P  +   VLL+ L+LS DPYMR    KL +         G+ + G  V++V++S +  + K  +V  L  W  +S I     L K+       +PLS   G +GMPGLTAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  L+ K GFD AFNYK    L+ AL+   P+  D Y
Sbjct:    2 VQAKSWTLKKHFEGFPTDGNFELKT----TELPPLNNGEVLLEALFLSVDPYMRVAAKKLKE---------GDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHS-ISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKVAYLK-KLGFDVAFNYKTVKSLEEALRTASPDGYDCY 214          
BLAST of FC931902 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.923e-34
Identity = 96/229 (41.92%), Postives = 128/229 (55.90%), Query Frame = 2
Query:   41 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPGGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKIL----DTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLRNKFGFDDAFNYKKEPDLDAALKRCFPEXIDIY 715
            V  K   L  +  G+P  SD ++ T    +++P      VLL+ LYL+ DPYMR             S   G+ + G  V++V++S +  +    +V   + W  +S I + + L K+L    DT +PLS   G +GMPGLTAY GL ++C  K GE V VSAA+GAVG +VGQ AKL GC VVG+AGS EKV  L+ K GFD A NYK    L+ ALK   PE  D Y
Sbjct:    2 VHAKSWTLKKHFVGYPTNSDFELKT----VELPPLKDGEVLLEALYLTVDPYMR---------IMAKSLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHS-ISNGEKLEKVLAEWPDT-LPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWLK-KHGFDVALNYKTVKSLEEALKEAAPEGYDCY 214          
BLAST of FC931902 vs. ExPASy Swiss-Prot
Match: PTGR1_PIG (Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.280e-34
Identity = 90/227 (39.65%), Postives = 127/227 (55.95%), Query Frame = 2
Query:   41 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPGGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSP--QHLIKILDTNVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLRNKFGFDDAFNYKKEPDLDAALKRCFPEXIDIY 715
            V  K   L  +  G+P  S+ ++ T    +++P      VLL+ L+L+ DPYMR    KL +         G+ + G  V++V++S +  +    +V  L  W  +S+      + L+      +PLS   G +GMPGLTAY GL ++C  K GE V V+AA+GAVG +VGQ AKL GC VVG+AGS EKV  L+ K+GFD AFNYK    L+  LK+  PE  D Y
Sbjct:    2 VRAKSWTLKKHFVGYPTPSNFELKT----VELPPLKNGEVLLEALFLTVDPYMRIAARKLKE---------GDMMMGEQVARVIESKNAAFPTGTIVVALLGWTTHSISDGKNLERLLAEWPDTLPLSLTLGTVGMPGLTAYFGLLDICGLKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVACLK-KYGFDVAFNYKTIESLEETLKKASPEGYDCY 214          
BLAST of FC931902 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.307e-34
Identity = 92/228 (40.35%), Postives = 123/228 (53.95%), Query Frame = 2
Query:   41 VSNKQVILSNYVTGFPKESDMKIITGSINLKVPGGSKDTVLLKNLYLSCDPYMRGRMSKLDKPSFVASFNPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEEYSLIQSPQHLIKILDT---NVPLSYYTGILGMPGLTAYGGLYELCSPKKGEYVYVSAASGAVGQLVGQFAKLVGCYVVGSAGSKEKVNLLRNKFGFDDAFNYKKEPDLDAALKRCFPEXIDIY 715
            V  K   L  +  G+P  SD ++ T  +    P      VLL+ L+L+ DPYMR    +L +         G+ + G  V+KV++S +    K  +V     W  +S I   + L K+L      +PLS   G +GMPGLTAY GL E+C  K GE V V+AA+GAVG +VGQ AKL GC VVG+ GS EKV  L+ K GFD  FNYK    L+  LK+  P+  D Y
Sbjct:    2 VRTKTWTLKKHFVGYPTNSDFELKTAEL----PPLKNGEVLLEALFLTVDPYMRVAAKRLKE---------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHS-ISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPDGYDCY 214          
The following BLAST results are available for this feature:
BLAST of FC931902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2_ARATH7.439e-8768.58Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH2.646e-8467.11Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YFMJ_BACSU1.796e-4044.44Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
YNCB_ECOLI4.577e-3639.30Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
PTGR1_RABIT1.020e-3540.79Prostaglandin reductase 1 OS=Oryctolagus cuniculus... [more]
YKM8_SCHPO1.472e-3440.00Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
PTGR1_MOUSE1.472e-3441.23Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_BOVIN1.923e-3441.92Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_PIG3.280e-3439.65Prostaglandin reductase 1 OS=Sus scrofa GN=PTGR1 P... [more]
PTGR1_HUMAN7.307e-3440.35Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]

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Properties
Property NameValue
Genbank descriptionC34202D08EF PostHarveN Citrus clementina cDNA clone C34202D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931902 ID=FC931902; Name=FC931902; organism=Citrus clementina; type=EST; length=716bp
AAAAACAAAATCTACATAAAAAATGGCGGGTGAAGAAGCAGTGAGCAACA
AGCAGGTGATTCTGAGCAACTACGTGACAGGGTTTCCCAAGGAATCAGAC
ATGAAGATAATAACAGGCTCAATAAACCTGAAGGTGCCAGGGGGCTCAAA
AGACACAGTGCTTTTGAAGAATCTTTATCTTTCCTGTGATCCTTACATGA
GAGGACGTATGAGTAAGCTTGATAAGCCTTCGTTTGTTGCCTCCTTCAAC
CCTGGCGAGCCCTTGAGCGGATATGGAGTGTCCAAAGTGTTGGATTCCAC
ACATCCAAATTATAAGAAAGATGACTTGGTCTGGGGCTTAACCAGTTGGG
AGGAGTACAGTCTCATCCAATCACCACAACATCTGATTAAAATTCTGGAT
ACAAATGTGCCTCTGTCATACTATACTGGGATTCTTGGTATGCCTGGTTT
GACTGCATATGGTGGTTTATATGAGCTTTGCTCTCCTAAGAAAGGAGAGT
ATGTCTATGTATCTGCAGCATCTGGAGCTGTTGGTCAGCTAGTTGGGCAA
TTTGCAAAGTTGGTTGGTTGCTATGTTGTTGGAAGTGCAGGAAGCAAAGA
AAAGGTCAATCTGTTGAGGAACAAGTTTGGGTTTGATGATGCTTTTAACT
ATAAGAAAGAGCCAGACTTGGATGCAGCTCTTAAGAGGTGCTTTCCTGAA
NGCATCGACATCTATT
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