FC931903

Overview
NameFC931903
Unique NameFC931903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3817 contig Ccv1_Contig3817:1..405. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931903 vs. ExPASy Swiss-Prot
Match: ISCU_MOUSE (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.050e-28
Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    4 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            +E G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct:   81 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 158          
BLAST of FC931903 vs. ExPASy Swiss-Prot
Match: ISCU_HUMAN (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.050e-28
Identity = 60/78 (76.92%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    4 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            +E G+IVDA FKTFGCGSAIASSS+ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct:   80 DEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 157          
BLAST of FC931903 vs. ExPASy Swiss-Prot
Match: ISU1_DEBHA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Debaryomyces hansenii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.516e-27
Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT 240
            D+ETG I D  FKTFGCGSAIASSS  TE VKGK I+E + IKNT IAK LSLPPVKLHCSMLAEDAIK+AVKDY +KR+
Sbjct:   82 DDETGVIKDVKFKTFGCGSAIASSSYLTELVKGKTIEEAVKIKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDYRSKRS 161          
BLAST of FC931903 vs. ExPASy Swiss-Prot
Match: NIFU_RICPR (NifU-like protein OS=Rickettsia prowazekii GN=nifU PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.189e-26
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 1
Query:   19 IVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            I DA FKTFGCGSAIASSS+ TEW+KGK +++   IKNTEIAK LSLPPVKLHCS+LAEDAIKAA+ DY+ KR
Sbjct:   53 ITDAKFKTFGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQKR 125          
BLAST of FC931903 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAP (NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=nifU PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.189e-26
Identity = 54/79 (68.35%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTK 243
            E G I DACFKT+GCGSAIASSS+ TEW+KGK I E  +IKNT I + L LPPVK+HCS+LAEDAIKAA+ DY++K+ K
Sbjct:   49 EQGIIEDACFKTYGCGSAIASSSLVTEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSKKNK 127          
BLAST of FC931903 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAI (NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nifU PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.859e-26
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            E G I DACFKT+GCGSAIASSS+ TEWVKGK I+E  SIKNT I + L LPPVK+HCS+LAEDAIKAA+ DY+ K+
Sbjct:   49 EKGIIEDACFKTYGCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYKRKK 125          
BLAST of FC931903 vs. ExPASy Swiss-Prot
Match: ISU1_KLULA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.859e-26
Identity = 57/79 (72.15%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            ++ETG I +  FKTFGCGSAIASSS  TE V+GK +++   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY+AKR
Sbjct:   96 NDETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYQAKR 174          
BLAST of FC931903 vs. ExPASy Swiss-Prot
Match: NIFU_SHIFL (NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.128e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of FC931903 vs. ExPASy Swiss-Prot
Match: NIFU_ECOLI (NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.128e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of FC931903 vs. ExPASy Swiss-Prot
Match: NIFU_ECOL6 (NifU-like protein OS=Escherichia coli O6 GN=nifU PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.128e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
The following BLAST results are available for this feature:
BLAST of FC931903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISCU_MOUSE1.050e-2876.92Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISCU_HUMAN1.050e-2876.92Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISU1_DEBHA1.516e-2776.25Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_RICPR2.189e-2675.34NifU-like protein OS=Rickettsia prowazekii GN=nifU... [more]
NIFU_BUCAP2.189e-2668.35NifU-like protein OS=Buchnera aphidicola subsp. Sc... [more]
NIFU_BUCAI2.859e-2671.43NifU-like protein OS=Buchnera aphidicola subsp. Ac... [more]
ISU1_KLULA2.859e-2672.15Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_SHIFL4.128e-2568.83NifU-like protein OS=Shigella flexneri GN=nifU PE=... [more]
NIFU_ECOLI4.128e-2568.83NifU-like protein OS=Escherichia coli (strain K12)... [more]
NIFU_ECOL64.128e-2568.83NifU-like protein OS=Escherichia coli O6 GN=nifU P... [more]

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Properties
Property NameValue
Genbank descriptionC34202D09EF PostHarveN Citrus clementina cDNA clone C34202D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931903 ID=FC931903; Name=FC931903; organism=Citrus clementina; type=EST; length=405bp
GATGAAGAGACTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTCGGCTG
TGGCTCGGCCATCGCTTCATCTTCTGTTGCAACGGAATGGGTGAAAGGGA
AGCAGATACAGGAAGTCTTGTCCATTAAAAACACGGAAATTGCAAAACAT
CTTTCTCTACCACCTGTTAAACTGCATTGCAGCATGCTTGCTGAAGATGC
TATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACGTACCAAACCAAGTG
CTGCTTCAGAGGCAGAACCAGCTCCAAGGGCTGCTGATGTTTGAAGATAT
TGATGTAAACATTTGAAAATGATGTTAATGTTCTGCCTGTGGAGATGTAT
CAGGATAACTGCACCTCCTAAAGATTGATGTCGTGTGGTGGAGGGGGTAA
AAGTT
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