FC931905

Overview
NameFC931905
Unique NameFC931905
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931905_ssr703 microsatellite FC931905_ssr703:703..712. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931905 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.424e-56
Identity = 111/221 (50.23%), Postives = 145/221 (65.61%), Query Frame = 1
Query:    4 ILTKSYKSSDSYLQVRSQVAEICKAQDSGALEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSIQARGSLLMFVASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQAL*Y*AADFF 666
            +L   Y +SD Y   +++V EI + + +  L+   + A FL Q   LT RSF+NM RD GYYW R            T++ N+GT  ++I ARGS   FV  F+TFM+IGGFPSFVEDMKVF+RERLNGHYG  AFV  NT SA P+L +I+ I G I Y + GLH G+ H+ +FVL L+A + +VESLMM +AS+VPN+L GII GAGIQ +    + FF
Sbjct:  342 LLVDYYHTSDYYYTAKAKVEEISQFKGT-ILDSGGSQASFLLQTYTLTKRSFINMSRDFGYYWLRLLIYILVTVCIGTIYLNVGTSYSAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFF 561          
BLAST of FC931905 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.571e-45
Identity = 92/221 (41.63%), Postives = 136/221 (61.54%), Query Frame = 1
Query:    7 LTKSYKSSDSYLQVRSQVAEICKAQDSGALE-KKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSIQARGSLLMFVASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQAL*Y*AADFF 666
            L ++Y+ S      +S++ E+   +    +E +K + A +  Q   LT RSFVNM RD+GYYW R            T+F ++G    SI AR S   F+  F+TFM+IGGFPSF+E+MKVF +ERL+G+YG + ++  N  S+ P+L  I+LI G+I Y++     G  H+ +F L +F  + ++ESLMM+VASLVPN+L G+ITGAGI  +    + FF
Sbjct:  320 LVENYRRSVYAKSAKSRIRELASIEGHHGMEVRKGSEATWFKQLRTLTKRSFVNMCRDIGYYWSRIVIYIVVSFCVGTIFYDVGHSYTSILARVSCGGFITGFMTFMSIGGFPSFIEEMKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFF 540          
BLAST of FC931905 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.250e-44
Identity = 90/220 (40.91%), Postives = 135/220 (61.36%), Query Frame = 1
Query:    7 LTKSYKSSDSYLQVRSQVAEICKAQDSGALEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSIQARGSLLMFVASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQAL*Y*AADFF 666
            L ++YK S      +S++ E+   +      +K + A +  Q   LT+RSF+NM RD+GYYW R            T+F ++G    SI AR S   F+  F+TFM+IGGFPSF+E+MKVF +ERL+G+YG + ++  N  S+ P+L  IS+I G I Y+L     G+ H+ +F L +F  + ++ESLMM+VAS+VPN+L G+ITGAG+  +    + FF
Sbjct:  320 LVENYKRSKYAKSAKSRIRELSNIEGLEMEIRKGSEATWWKQLRTLTARSFINMCRDVGYYWTRIISYIVVSISVGTIFYDVGYSYTSILARVSCGGFITGFMTFMSIGGFPSFLEEMKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFF 539          
BLAST of FC931905 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.697e-39
Identity = 84/220 (38.18%), Postives = 124/220 (56.36%), Query Frame = 1
Query:    7 LTKSYKSSDSYLQVRSQVAEICKAQDSGALEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSIQARGSLLMFVASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQAL*Y*AADFF 666
            L + +K S      R+++ EI          KK +  ++  Q  +LT RSF+NM RDLGYYW R            ++F N+G ++ ++ +  +   F+A F+TFM+IGGF SF+E+MKVF RERLNGHYG   +   N  S+LP++ L+ L   +I   +     G  HF Y  L L   +  VES MM++AS+VPN+L G++ GAG   +   +A FF
Sbjct:  315 LVRKFKCSLYAAASRARIQEIASIVGIVTERKKGSQTNWWKQLRILTQRSFINMSRDLGYYWMRIAVYIVLSICVGSIFFNVGRNHTNVMSTAACGGFMAGFMTFMSIGGFQSFIEEMKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFF 534          
BLAST of FC931905 vs. ExPASy Swiss-Prot
Match: AB4G_ARATH (ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 49/163 (30.06%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  124 LTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSIQARGSLLMFVASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTG 612
            +T+  +L+SR +  +YR                    T++ N+GT    I+ R  L  F  +FL   T    P F+++  +  RE  +G Y  ++ +  NT   LPYL LI++I    +Y L GL   +Q   YFVL+++  +L+  S ++ ++SL PNY+ G
Sbjct:  298 ITEISLLSSRFWKIIYRTRQLLLTNILESLVVGLVLGTIYLNIGTGKEGIRKRFGLFAFTLTFLLSSTTQTLPIFIDERPILLRETSSGLYRLSSHILANTLVFLPYLLLIAIIYSVSLYFLVGLCFSWQALAYFVLVIWIIVLMANSFVLFLSSLAPNYIAG 460          
BLAST of FC931905 vs. ExPASy Swiss-Prot
Match: AB8G_ARATH (ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.881e-16
Identity = 44/126 (34.92%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  235 TVFSNLGTDNNSIQARGSLLMFVASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTG 612
            T++ N+G     I+ R  +  F  +FL   T    P F+ +  +  RE  +G Y  ++ +  NT   LPYL +IS+I    VY L GL   +Q F YFVL+++  +L+  S ++ ++SL PNY+TG
Sbjct:  347 TIYINIGIGKAGIEKRFGMFAFTLTFLLSSTTETLPIFINERPILLRETSSGIYRLSSHILANTLVFLPYLFVISIIYSVSVYFLIGLCPTWQAFGYFVLVIWIILLMANSFVLFLSSLAPNYITG 472          
BLAST of FC931905 vs. ExPASy Swiss-Prot
Match: AB10G_ARATH (ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.051e-15
Identity = 49/196 (25.00%), Postives = 92/196 (46.94%), Query Frame = 1
Query:   52 SQVAEICKAQDSGALEKKSTHAD-FLTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSIQA-RGSLLMFVASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGI 633
            S+  + C     G L +  +H++  L +  +L  RS  N++R    +  R            +++ N+G      +  R     F+ +FL   T  G P F++D ++  RE     Y   ++V  +T   +P+L +IS++    VY L GL +    F YF L+++  +L+  S +   ++LVPN++ G    +G+
Sbjct:  306 SKTWKSCYISAGGELHQSDSHSNSVLEEVQILGQRSCKNIFRTKQLFTTRALQASIAGLILGSIYLNVGNQKKEAKVLRTGFFAFILTFLLSSTTEGLPIFLQDRRILMRETSRRAYRVLSYVLADTLIFIPFLLIISMLFATPVYWLVGLRRELDGFLYFSLVIWIVLLMSNSFVACFSALVPNFIMGTSVISGL 501          
BLAST of FC931905 vs. ExPASy Swiss-Prot
Match: AB5G_ARATH (ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 44/169 (26.04%), Postives = 85/169 (50.30%), Query Frame = 1
Query:  124 LTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSIQARGSLLMFVASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTG--IITG 624
            L + ++LT R   N++R    +  R             +F NL  D    + R  L  F+ +FL   TI   P F+++ ++  +E  +G Y  +++   N    LP+L +++++    VY L GL+  +  F +F LL++  +    S+++  ++LVPN++ G  +I+G
Sbjct:  370 LEETMILTHRFSKNIFRTKELFACRTVQMLGSGIVLGLIFHNLKDDLKGARERVGLFAFILTFLLTSTIEALPIFLQEREILMKETSSGSYRVSSYAVANGLVYLPFLLILAILFSTPVYWLVGLNPSFMAFLHFSLLIWLILYTANSVVVCFSALVPNFIVGNSVISG 538          
BLAST of FC931905 vs. ExPASy Swiss-Prot
Match: AB23G_ARATH (ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 45/179 (25.14%), Postives = 90/179 (50.28%), Query Frame = 1
Query:   79 QDSGALEKKSTHADF-LTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSIQARGSLLMFVASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTG 612
            ++ G + KK       +T+   L SR    +YR    +  R            +V++ L  D   +  R  L  F  SFL   T+   P ++ + +V  +E   G Y  ++++  NT + +P+L ++SL+    VY + GL+   Q F++FVL ++  +L+  SL++ ++++ P++++G
Sbjct:  333 ENDGIISKKEAFRVLDVTEISYLCSRFCKIIYRTKQLFLARTMQAVVAGLGLGSVYTRLKRDEEGVAERLGLFAFSLSFLLSSTVEALPIYLRERRVLMKESSRGSYRISSYMIANTIAFVPFLFVVSLLFSIPVYWIVGLNPSIQAFSFFVLCVWLIILMASSLVLFLSAVSPDFISG 511          
BLAST of FC931905 vs. ExPASy Swiss-Prot
Match: ADP1_YEAST (Probable ATP-dependent permease OS=Saccharomyces cerevisiae GN=ADP1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 53/198 (26.77%), Postives = 85/198 (42.93%), Query Frame = 1
Query:    4 ILTKSYKSSDSYLQVRSQVAEICKAQD------SGALEKKSTHADFLTQCIVLTSRSFVNMYRDLGYYWFRXXXXXXXXXXXATVFSNLGTDNNSIQARGSLLMFVASFLTFMTIGGFPSFVEDMKVFERERLNGHYGATAFVFGNTFS-ALPYLALISLIPGAIVYDLPGLHKGYQHF--TYFVLLLFACMLLVESL 570
            +L   YK S  Y ++  ++ E+    D      +G L      A FL Q  +L SRSF NMYR+                   T++ N+  D +  Q R  L  F+ ++  F+T  G  SF  +  +F +ER N +Y   A+      S  +P   +  ++   IVY + GL+     F     +L+LF   + +E L
Sbjct:  728 LLHDKYKDSVYYAELSQEIEEVLSEGDEESNVLNGDLPTGQQSAGFLQQLSILNSRSFKNMYRNPKLLLGNYLLTILLSLFLGTLYYNVSNDISGFQNRMGLFFFILTYFGFVTFTGLSSFALERIIFIKERSNNYYSPLAYYISKIMSEVVPLRVVPPILLSLIVYPMTGLNMKDNAFFKCIGILILFNLGISLEIL 925          
The following BLAST results are available for this feature:
BLAST of FC931905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AB11G_ARATH1.424e-5650.23ABC transporter G family member 11 OS=Arabidopsis ... [more]
AB12G_ARATH9.571e-4541.63ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB15G_ARATH1.250e-4440.91ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB13G_ARATH2.697e-3938.18ABC transporter G family member 13 OS=Arabidopsis ... [more]
AB4G_ARATH3.790e-1730.06ABC transporter G family member 4 OS=Arabidopsis t... [more]
AB8G_ARATH1.881e-1634.92ABC transporter G family member 8 OS=Arabidopsis t... [more]
AB10G_ARATH6.051e-1525.00ABC transporter G family member 10 OS=Arabidopsis ... [more]
AB5G_ARATH2.299e-1426.04ABC transporter G family member 5 OS=Arabidopsis t... [more]
AB23G_ARATH2.299e-1425.14ABC transporter G family member 23 OS=Arabidopsis ... [more]
ADP1_YEAST6.262e-1226.77Probable ATP-dependent permease OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank descriptionC34202D11EF PostHarveN Citrus clementina cDNA clone C34202D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931905 ID=FC931905; Name=FC931905; organism=Citrus clementina; type=EST; length=731bp
GATATTCTTACAAAATCTTATAAATCCTCTGACAGCTATCTGCAAGTGCG
AAGCCAGGTGGCTGAAATATGCAAGGCACAGGATTCTGGAGCTCTGGAGA
AAAAGAGTACCCATGCTGACTTTCTCACTCAATGCATAGTTCTCACAAGC
AGATCTTTTGTGAACATGTATCGTGATCTAGGTTACTACTGGTTTCGCCT
AGGTGTTTATGTCTTACTGGGAGTAGGTCTTGCCACTGTATTTAGCAATC
TTGGGACTGACAATAATTCAATTCAGGCAAGAGGTTCGCTGCTCATGTTT
GTAGCTTCATTTCTAACCTTCATGACCATTGGTGGATTCCCTTCTTTTGT
TGAGGACATGAAGGTATTTGAGCGAGAGAGGCTAAACGGGCACTATGGTG
CTACTGCGTTTGTGTTTGGCAACACGTTTTCTGCGCTGCCATACTTAGCT
CTCATTTCATTGATTCCTGGAGCGATAGTGTATGACCTTCCGGGACTTCA
CAAAGGATATCAACACTTCACATACTTTGTTTTGTTATTGTTTGCTTGCA
TGTTGCTCGTTGAGAGCCTAATGATGATCGTTGCAAGCTTGGTGCCCAAC
TATCTGACGGGCATAATAACAGGAGCTGGAATTCAGGCCTTATGATATTA
GGCGGCGGATTTTTTCGATTGCCAATGATCTTCTCATCCATTTGGAATAC
CCATATATATATGCTTTCACAATATGCGTAT
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