FC931906

Overview
NameFC931906
Unique NameFC931906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:5..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS31_ARATH (40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.246e-94
Identity = 176/190 (92.63%), Postives = 183/190 (96.32%), Query Frame = 2 
Query:  104 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVRSCL 673
            MATQISKKRKFVADGVF+AELNEVLTRELAEDGY GVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEVIVSGKLRA RAKSMKF+DGYMVSSGQP  EYID+AVRHVLLRQGVLGIKV+  L
Sbjct:    1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKVKIML 190

HSP 2 Score: 23.483 bits (49), Expect = 1.246e-94
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 1 
Query:  661 QIMLSWDPNGK 693
            +IML WDP GK
Sbjct:  187 KIMLDWDPTGK 197
[Close]
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS33_ARATH (40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 1.625e-94
Identity = 174/190 (91.58%), Postives = 183/190 (96.32%), Query Frame = 2 
Query:  104 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVRSCL 673
            MATQISKKRKFVADGVF+AELNEVLTRELAEDGY GVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEVIVSGKLRA RAKSMKF+DGYMVSSGQP  EYID+AVRHVLLRQGVLG+KV+  L
Sbjct:    1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKVKIML 190

HSP 2 Score: 25.409 bits (54), Expect = 1.625e-94
Identity = 9/12 (75.00%), Postives = 10/12 (83.33%), Query Frame = 1 
Query:  661 QIMLSWDPNGKQ 696
            +IML WDP GKQ
Sbjct:  187 KIMLDWDPKGKQ 198
[Close]
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS32_ARATH (40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 8.011e-94
Identity = 176/190 (92.63%), Postives = 182/190 (95.79%), Query Frame = 2 
Query:  104 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVRSCL 673
            M TQISKKRKFVADGVF+AELNEVLTRELAEDGY GVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGAKGCEVIVSGKLRA RAKSMKF+DGYMVSSGQP  EYIDSAVRHVLLRQGVLGIKV+  L
Sbjct:    1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKVKVML 190

HSP 2 Score: 21.1718 bits (43), Expect = 8.011e-94
Identity = 6/10 (60.00%), Postives = 8/10 (80.00%), Query Frame = 1 
Query:  661 QIMLSWDPNG 690
            ++ML WDP G
Sbjct:  187 KVMLDWDPKG 196
[Close]
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS31_XENLA (40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-A PE=2 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 2.338e-87
Identity = 165/190 (86.84%), Postives = 172/190 (90.53%), Query Frame = 2 
Query:  104 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVRSCL 673
            MA QISKKRKFVADG+F AELNE LTRELAEDGY GVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKV+  L
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIML 190

HSP 2 Score: 23.483 bits (49), Expect = 2.338e-87
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  661 QIMLSWDPNGK 693
            +IML WDP+GK
Sbjct:  187 KIMLPWDPSGK 197
[Close]
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_RAT (40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.339e-87
Identity = 165/190 (86.84%), Postives = 172/190 (90.53%), Query Frame = 2 
Query:  104 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVRSCL 673
            MA QISKKRKFVADG+F AELNE LTRELAEDGY GVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKV+  L
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIML 190

HSP 2 Score: 23.483 bits (49), Expect = 2.339e-87
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  661 QIMLSWDPNGK 693
            +IML WDP+GK
Sbjct:  187 KIMLPWDPSGK 197
[Close]
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_MOUSE (40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.339e-87
Identity = 165/190 (86.84%), Postives = 172/190 (90.53%), Query Frame = 2 
Query:  104 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVRSCL 673
            MA QISKKRKFVADG+F AELNE LTRELAEDGY GVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKV+  L
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIML 190

HSP 2 Score: 23.483 bits (49), Expect = 2.339e-87
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1 
Query:  661 QIMLSWDPNGK 693
            +IML WDP+GK
Sbjct:  187 KIMLPWDPSGK 197
[Close]
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_AMBME (40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.050e-87
Identity = 164/190 (86.32%), Postives = 172/190 (90.53%), Query Frame = 2 
Query:  104 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVRSCL 673
            MA QISKKRKFVADG+F AELNE LTRELAEDGY GVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG+KGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKV+  L
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIML 190

HSP 2 Score: 24.2534 bits (51), Expect = 3.050e-87
Identity = 8/11 (72.73%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  661 QIMLSWDPNGK 693
            +IML+WDP+GK
Sbjct:  187 KIMLAWDPSGK 197
[Close]
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_PIG (40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 3.051e-87
Identity = 165/190 (86.84%), Postives = 172/190 (90.53%), Query Frame = 2 
Query:  104 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVRSCL 673
            MA QISKKRKFVADG+F AELNE LTRELAEDGY GVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKV+  L
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIML 190

HSP 2 Score: 23.0978 bits (48), Expect = 3.051e-87
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 1 
Query:  661 QIMLSWDPNGK 693
            +IML WDP GK
Sbjct:  187 KIMLPWDPTGK 197
[Close]
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_HUMAN (40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 3.051e-87
Identity = 165/190 (86.84%), Postives = 172/190 (90.53%), Query Frame = 2 
Query:  104 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVRSCL 673
            MA QISKKRKFVADG+F AELNE LTRELAEDGY GVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKV+  L
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIML 190

HSP 2 Score: 23.0978 bits (48), Expect = 3.051e-87
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 1 
Query:  661 QIMLSWDPNGK 693
            +IML WDP GK
Sbjct:  187 KIMLPWDPTGK 197
[Close]
BLAST of FC931906 vs. ExPASy Swiss-Prot
Match: RS3_BOVIN (40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 3.051e-87
Identity = 165/190 (86.84%), Postives = 172/190 (90.53%), Query Frame = 2 
Query:  104 MATQISKKRKFVADGVFFAELNEVLTRELAEDGYPGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFEDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVRSCL 673
            MA QISKKRKFVADG+F AELNE LTRELAEDGY GVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG M+ SG PVN Y+D+AVRHVLLRQGVLGIKV+  L
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIML 190

HSP 2 Score: 23.0978 bits (48), Expect = 3.051e-87
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 1 
Query:  661 QIMLSWDPNGK 693
            +IML WDP GK
Sbjct:  187 KIMLPWDPTGK 197
The following BLAST results are available for this feature:
BLAST of FC931906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS31_ARATH1.246e-9492.6340S ribosomal protein S3-1 OS=Arabidopsis thaliana... [more]
RS33_ARATH1.625e-9491.5840S ribosomal protein S3-3 OS=Arabidopsis thaliana... [more]
RS32_ARATH8.011e-9492.6340S ribosomal protein S3-2 OS=Arabidopsis thaliana... [more]
RS31_XENLA2.338e-8786.8440S ribosomal protein S3-A OS=Xenopus laevis GN=rp... [more]
RS3_RAT2.339e-8786.8440S ribosomal protein S3 OS=Rattus norvegicus GN=R... [more]
RS3_MOUSE2.339e-8786.8440S ribosomal protein S3 OS=Mus musculus GN=Rps3 P... [more]
RS3_AMBME3.050e-8786.3240S ribosomal protein S3 OS=Ambystoma mexicanum GN... [more]
RS3_PIG3.051e-8786.8440S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=... [more]
RS3_HUMAN3.051e-8786.8440S ribosomal protein S3 OS=Homo sapiens GN=RPS3 P... [more]
RS3_BOVIN3.051e-8786.8440S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34202D12EF PostHarveN Citrus clementina cDNA clone C34202D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931906 ID=FC931906; Name=FC931906; organism=Citrus clementina; type=EST; length=718bp
GCTAAACTAAACCTAGGGTTTGCAGGGAGCTAGCTGCGCACACAAGCCAC
CTCATTGAGATCATCAGATCCCTATCTCTGTAATCGAATCAACAGAAAGC
AAAATGGCGACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATGGCGT
GTTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAGGACG
GTTATCCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGATCATC
ATCCGAGCCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGAGAAT
TAGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAGAATA
GCGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGCCATT
GCTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTGTTCG
CAGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCCAAGG
GATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAAATCA
ATGAAGTTTGAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGAATGA
ATATATTGACTCTGCTGTGAGACATGTTCTTTTGAGACAGGGTGTACTTG
GTATTAAGGTCAGATCATGCTTAGTTGGGATCCTAATGGAAAGCAGGTCC
TACTACCCCTCTACCTGA
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