FC931912

Overview
NameFC931912
Unique NameFC931912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931912_ssr669 microsatellite FC931912_ssr669:669..683. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.376e-24
Identity = 67/139 (48.20%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  247 MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNIS--DSFNAPIREENGGFCKF-----DSVVQVNRPXXXXXXXXXXXXXGPRP 642
            MRRGR+ AAAP+    +  G   S +IR+RGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS             +LRGPKAKTNFPL  +    FN      N  F        D+ +   RP             GPRP
Sbjct:    1 MRRGRA-AAAPAPVTGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPLPYAHHHQFNQGHNPNNDPFVDSRFYPQDNPIISQRPTSSSMSSTVESFSGPRP 138          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.142e-21
Identity = 50/89 (56.18%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  247 MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNIS 513
            MRRGR ++A     +          +IR+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDS             +LRGPKAKTNFP++ S
Sbjct:    1 MRRGRGSSAVAGPTVVAAINGSVK-EIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPIDSS 88          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 52/92 (56.52%), Postives = 62/92 (67.39%), Query Frame = 1
Query:  247 MRRGR-STAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDS 519
            MR+GR S+   P+ P+   T   +  + RYRGVRKRPWGRFAAEIRDP KK+RVWLGTFDS             +LRGPKAKTNFP++ S S
Sbjct:    1 MRKGRGSSVVGPALPV---TAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPIDCSPS 89          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 42/68 (61.76%), Postives = 47/68 (69.12%), Query Frame = 1
Query:  322 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDSFN 525
            ++ YRGVRKRPWGR+AAEIRDPWKKTRVWLGTFD+              LRG KAKTNFP  +S   N
Sbjct:    9 EVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSPLSLDLN 76          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 43/79 (54.43%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  322 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL---NISDSFNAPIREENG 549
            ++ YRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+               RGPKAKTNFPL   N S S ++ +   +G
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLPSENQSTSHSSTMESSSG 102          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  274 APSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPLNISDS 519
            AP+ P    +   A+ +IRYRGVRKRPWGR+AAEIRDP KKTRVWLGTFD+               RG KAKTNF + +  S
Sbjct:   14 APTNPTHHESN--AAKEIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSS 93          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.056e-16
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  322 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP--LNISD 516
            +IRYRGVRKRPWGR+AAEIRDP KKTRVWLGTFD+               RG KAKTNFP  L +SD
Sbjct:   22 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFPTFLELSD 88          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.379e-16
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  322 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL---NISDSFNAPIREENG 549
            ++ YRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+               RGPKAKTNFP    N S S ++ +   +G
Sbjct:   24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPSPTENQSPSHSSTVESSSG 102          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.352e-16
Identity = 43/83 (51.81%), Postives = 50/83 (60.24%), Query Frame = 1
Query:  256 GRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL 504
            GRS A +     +  T      ++ +RGVRKRPWGR+AAEIRDP KKTRVWLGTFD+               RG KAKTNFPL
Sbjct:    8 GRSIAVSEGGGGKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPL 90          
BLAST of FC931912 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 1
Query:  325 IRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 501
            +RYRGVRKRPWGR+AAEIRDP+KK+RVWLGTFD+               RG KAKTNFP
Sbjct:   18 VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
The following BLAST results are available for this feature:
BLAST of FC931912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ERF3_TOBAC1.376e-2448.20Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF82_ARATH4.142e-2156.18Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF83_ARATH2.685e-2056.52Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF81_ARATH1.247e-1761.76Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF4_NICSY4.740e-1754.43Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF79_ARATH1.056e-1653.66Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF78_ARATH1.056e-1664.18Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF4_TOBAC1.379e-1653.16Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF80_ARATH2.352e-1651.81Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF76_ARATH6.844e-1664.41Ethylene-responsive transcription factor 11 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC34202E06EF PostHarveN Citrus clementina cDNA clone C34202E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931912 ID=FC931912; Name=FC931912; organism=Citrus clementina; type=EST; length=709bp
GAATGAACCCGGAATCGTGCGTTTCCGGAGCCCATCATTCATCAAAATCC
CCAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAATCAAAGCAGTCAATCA
ACAAATCTTTCACAAACCCCCCCACCATAAAAAAAAAAAAAAAATGGAAA
CGCGGTGGTAGCCTCTGTTATTAACAAAAATTTTCCCATACTTTCCCTCA
GCTTCCCACCCTTTCCTTTCCGATTTTCCTTTTCCATTATTTCCCCATGC
GGCGAGGCAGGAGCACGGCAGCAGCGCCCAGTAAGCCGATAGAGAAACGC
ACCGGACCCGAAGCATCGCCCGACATCCGATACAGAGGCGTGAGGAAGCG
TCCATGGGGCAGATTCGCCGCCGAGATCCGAGATCCCTGGAAGAAGACGC
GTGTCTGGCTCGGCACCTTCGACTCAGCCGAAGACGCCGCGCGTGCGTAC
GACGCCGCCGCGCGTTCCCTCCGTGGCCCCAAGGCCAAGACCAATTTTCC
CCTCAATATTTCGGACTCTTTTAACGCTCCGATACGGGAGGAAAATGGAG
GGTTTTGTAAGTTTGACTCGGTTGTTCAGGTCAACCGGCCCACGACGAGC
AGCATGAGCAGCACCGTCGAGTCCTTCAGTGGGCCCCGGCCGGCCAATCA
GTTGGCGCCACCACGTCTGCAGCAGCAGCAGCAGAAGAAGATCGTCGTGC
AACCGGCGG
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