FC931929

Overview
NameFC931929
Unique NameFC931929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15159 contig Ccv1_Contig15159:230..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 1.195e-92
Identity = 165/230 (71.74%), Postives = 192/230 (83.48%), Query Frame = 2
Query:    2 MPQFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPALGITRK 691
            +PQ+F+DFSFSEIE AT++FD +LKIGEGGYGSIY GLLRH QVAIKML+P+S QGP E+QQE+D+LSK+RHPN++TL+GACPE W+LVYEYLP GSLEDRL+CKDNSPPLSWQ R+RIATE+C+ L+FLHS K HS+VHGDLKPANILLD+N VSKLSDFG    L  N   S       RTD  GT AY+DPE  +SGELTPKS VYSFGIILLR LTGRPAL I+ +
Sbjct:  462 LPQYFTDFSFSEIEEATNHFDSTLKIGEGGYGSIYVGLLRHTQVAIKMLNPNSSQGPVEYQQEVDVLSKMRHPNIITLIGACPEGWSLVYEYLPGGSLEDRLTCKDNSPPLSWQNRVRIATEICAALVFLHSNKAHSLVHGDLKPANILLDSNLVSKLSDFGTCSLLHPNGSKS------VRTDVTGTVAYLDPEASSSGELTPKSDVYSFGIILLRLLTGRPALRISNE 685          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.090e-61
Identity = 118/229 (51.53%), Postives = 168/229 (73.36%), Query Frame = 2
Query:   20 DFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPALGITR--KCSM 700
            D+SF EI  AT+ FDPS K+GEG YGS+YKG L+H+QVA+KML  +      EF++ ++ILS++RHPNLVTL+GACPE  +L+Y+Y+PNGSLED  S ++N P LSW++RIRIA+E+CS L+FLHS  P  I+HG+LKP+ ILLD+N V+K++D+GIS+ +  + +         ++DP     ++DP +  S E+T +S +Y+FGIILL+ LT RP  GI R  KC++
Sbjct:  447 DYSFMEINEATNEFDPSWKLGEGKYGSVYKGNLQHLQVAVKMLPSYGSLNHFEFERRVEILSRVRHPNLVTLMGACPESRSLIYQYIPNGSLEDCFSSENNVPALSWESRIRIASEICSALLFLHSNIP-CIIHGNLKPSKILLDSNLVTKINDYGISQLIPIDGLD--------KSDP-----HVDPHYFVSREMTLESDIYAFGIILLQLLTRRPVSGILRDVKCAL 661          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.860e-61
Identity = 114/224 (50.89%), Postives = 157/224 (70.09%), Query Frame = 2
Query:   14 FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPALGIT 685
            +  +++ EI  AT +F  +LKIG G YGS+YK  L H   A+K+LH    Q   +F QE++ILSKIRHP+LV L+GACPE   LVYEY+ NGSL+DRL   +++PP+ W  R RIA E+ S L+FLH  KP  I+H DLKP NILLD NFVSKL D G+S  ++Q+++SS   T+  +T P GT  Y+DPE+  +G ++PKS VYS G+++L+ +T +PA+ IT
Sbjct:  475 YQHYTWEEIAAATSDFAENLKIGIGAYGSVYKCNLHHTTGAVKVLHAGETQLSKQFDQELEILSKIRHPHLVLLLGACPERGCLVYEYMDNGSLDDRLMLVNDTPPIPWFERFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDVSSR--TIFKQTSPVGTLCYIDPEYQRTGIISPKSDVYSLGVVILQLITAKPAIAIT 696          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 4.582e-60
Identity = 115/224 (51.34%), Postives = 153/224 (68.30%), Query Frame = 2
Query:   14 FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPALGIT 685
            +  F++ EI  AT +F   LKIG G YG++YK  L H    +K+L     Q   +FQQE++ILSKIRHP+LV L+GACPE   LVYEY+ NGSLEDRL   +NSPPL W  R RIA E+ + L+FLH  KP  I+H DLKPANILLD NFVSK+ D G+S  +  + +S+   T+  +T P GT  Y+DPE+  +G ++ KS +YSFG+ILL+ LT +PA+ +T
Sbjct:  465 YQHFAWEEIMAATSSFSEELKIGMGAYGAVYKCNLHHTTAVVKVLQSAENQLSKQFQQELEILSKIRHPHLVLLLGACPEQGALVYEYMENGSLEDRLFQVNNSPPLPWFERFRIAWEVAAALVFLHKSKPKPIIHRDLKPANILLDHNFVSKVGDVGLSTMVQVDPLST-KFTIYKQTSPVGTLCYIDPEYQRTGRISSKSDIYSFGMILLQLLTAKPAIALT 687          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.616e-59
Identity = 111/224 (49.55%), Postives = 152/224 (67.86%), Query Frame = 2
Query:   14 FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPALGIT 685
            + +F++ EI  AT +F   LKIG G YG +YK  L H   A+K+LH        +F QE++ILSKIRHP+LV L+GACP+   LVYEY+ NGSLEDRL   ++S P+ W  R+RIA E+ S L+FLH  KP  I+H DLKPANILL+ NFVSK+ D G+S  +   +  S   T+  +T P GT  Y+DPE+  +G ++PKS VY+FG+I+L+ LTG+ A+ +T
Sbjct:  445 YQEFTWEEIINATSSFSEDLKIGMGAYGDVYKCNLHHTIAAVKVLHSAESSLSKQFDQELEILSKIRHPHLVLLLGACPDHGALVYEYMENGSLEDRLFQVNDSQPIPWFVRLRIAWEVASALVFLHKSKPTPIIHRDLKPANILLNHNFVSKVGDVGLSTMIQAADPLSTKFTMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYAFGMIILQLLTGQQAMALT 668          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: PUB51_ARATH (U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.379e-56
Identity = 116/231 (50.22%), Postives = 154/231 (66.67%), Query Frame = 2
Query:    8 QFFSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCK------DNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPALGI 682
            Q +  F + EI  AT +F   LKIG GGYGS+Y+  L H  VA+K+LH        +F QE++ILSKIRHP+L+ L+GACPE  +LVYEY+ NGSLE+RL  +         PPL W  R RIA E+ S L FLH+ +P  IVH DLKPANILLD N VSK+ D G+S+ +  N   S+ +T+   T P GTF Y+DPE+  +G +TP+S +Y+FGIILL+ +T R A+G+
Sbjct:  412 QQYMKFEWEEIVEATSSFSDELKIGVGGYGSVYRCNLHHTTVAVKVLHSDKSSLTKQFHQELEILSKIRHPHLLLLLGACPERGSLVYEYMHNGSLEERLMKRRPNVDTPQPPPLRWFERFRIAWEIASALYFLHTNEPRPIVHRDLKPANILLDRNNVSKIGDVGLSKMV--NLDPSHASTVFNETGPVGTFFYIDPEYQRTGVVTPESDIYAFGIILLQLVTARSAMGL 640          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.298e-50
Identity = 98/223 (43.95%), Postives = 145/223 (65.02%), Query Frame = 2
Query:   14 FSDFSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRHMQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPEVWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPALGI 682
            +  ++  EI  AT  F P   IGEGGYG +Y+  L     A+K++   + +   EF +E+++LS++RHP++V L+GACPE   LVYEYL NGSLE+ +  + N PPL W  R R+  E+   L FLHS KP  IVH DLKP NILL+ N+VSK++D G+++ ++  +++ +N T+   +   GT  Y+DPE+  +G + PKS +Y+FGII+L+ LT R   GI
Sbjct:  427 YRKYTIEEIVTATEGFSPEKVIGEGGYGKVYQCSLDSTPAAVKVVRLDTPEKKQEFLKEVEVLSQLRHPHVVLLLGACPENGCLVYEYLENGSLEEYIFHRKNKPPLPWFIRFRVIFEVACGLAFLHSSKPEPIVHRDLKPGNILLNRNYVSKIADVGLAKLVT--DVAPDNVTMYRNSVLAGTLHYIDPEYHRTGTIRPKSDLYAFGIIILQLLTARNPSGI 647          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45
Identity = 101/222 (45.50%), Postives = 143/222 (64.41%), Query Frame = 2
Query:   23 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPE--VWTLVYEYLPNGSLEDRLSCKDNS--PPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRP 670
            FS  EI+ AT++F+  L IG GG+GS+YKG +      VA+K L   S QG  EF+ E+++LSK+RH +LV+L+G C E     LVYEY+P+G+L+D L  +D +  PPLSW+ R+ I       L +LH+   ++I+H D+K  NILLD NFV+K+SDFG+SR    +   ++ +T+      KGTF Y+DPE+     LT KS VYSFG++LL  L  RP
Sbjct:  506 FSIFEIKSATNDFEDKLIIGVGGFGSVYKGQIDGGATLVAVKRLEITSNQGAKEFETELEMLSKLRHVHLVSLIGYCDEDNEMVLVYEYMPHGTLKDHLFRRDKTSDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVTKVSDFGLSRVGPTSASQTHVSTVV-----KGTFGYLDPEYYRRQVLTEKSDVYSFGVVLLEVLCCRP 722          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.582e-44
Identity = 100/222 (45.05%), Postives = 142/222 (63.96%), Query Frame = 2
Query:   23 FSFSEIEGATHNFDPSLKIGEGGYGSIYKGLLRH--MQVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPE--VWTLVYEYLPNGSLEDRLSCKDNS--PPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRFLSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRP 670
            FS  EI+ AT++F+  L IG GG+GS+YKG +      VA+K L   S QG  EF  E+++LSK+RH +LV+L+G C +     LVYEY+P+G+L+D L  +D +  PPLSW+ R+ I       L +LH+   ++I+H D+K  NILLD NFV+K+SDFG+SR    +   ++ +T+      KGTF Y+DPE+     LT KS VYSFG++LL  L  RP
Sbjct:  513 FSIYEIKSATNDFEEKLIIGVGGFGSVYKGRIDGGATLVAVKRLEITSNQGAKEFDTELEMLSKLRHVHLVSLIGYCDDDNEMVLVYEYMPHGTLKDHLFRRDKASDPPLSWKRRLEICIGAARGLQYLHTGAKYTIIHRDIKTTNILLDENFVAKVSDFGLSRVGPTSASQTHVSTVV-----KGTFGYLDPEYYRRQILTEKSDVYSFGVVLLEVLCCRP 729          
BLAST of FC931929 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.066e-44
Identity = 96/219 (43.84%), Postives = 141/219 (64.38%), Query Frame = 2
Query:   38 IEGATHNFDPSLKIGEGGYGSIYKGLLRHM-QVAIKMLHPHSLQGPSEFQQEIDILSKIRHPNLVTLVGACPE--VWTLVYEYLPNGSLEDRLSCKDNSPPLSWQTRIRIATELCSVLIFLHSCKPHSIVHGDLKPANILLDANFVSKLSDFGISRF---LSQNEISSNNTTLCCRTDPKGTFAYMDPEFLASGELTPKSGVYSFGIILLRFLTGRPAL 676
            I+ AT +FD SL IG GG+G +YKG+LR   +VA+K   P S QG +EF+ E+++L++ RH +LV+L+G C E     +VYEY+  G+L+D L   D+ P LSW+ R+ I       L +LH+    +I+H D+K ANILLD NF++K++DFG+S+    L Q  +S         T  KG+F Y+DPE+L   +LT KS VYSFG+++L  + GRP +
Sbjct:  480 IKEATDDFDESLVIGVGGFGKVYKGVLRDKTEVAVKRGAPQSRQGLAEFKTEVEMLTQFRHRHLVSLIGYCDENSEMIIVYEYMEKGTLKDHLYDLDDKPRLSWRQRLEICVGAARGLHYLHTGSTRAIIHRDVKSANILLDDNFMAKVADFGLSKTGPDLDQTHVS---------TAVKGSFGYLDPEYLTRQQLTEKSDVYSFGVVMLEVVCGRPVI 689          
The following BLAST results are available for this feature:
BLAST of FC931929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PUB33_ARATH1.195e-9271.74U-box domain-containing protein 33 OS=Arabidopsis ... [more]
PUB32_ARATH1.090e-6151.53U-box domain-containing protein 32 OS=Arabidopsis ... [more]
PUB52_ARATH1.860e-6150.89U-box domain-containing protein 52 OS=Arabidopsis ... [more]
PUB35_ARATH4.582e-6051.34U-box domain-containing protein 35 OS=Arabidopsis ... [more]
PUB53_ARATH6.616e-5949.55Putative U-box domain-containing protein 53 OS=Ara... [more]
PUB51_ARATH1.379e-5650.22U-box domain-containing protein 51 OS=Arabidopsis ... [more]
PUB34_ARATH4.298e-5043.95U-box domain-containing protein 34 OS=Arabidopsis ... [more]
Y5900_ARATH3.188e-4545.50Putative receptor-like protein kinase At5g39000 OS... [more]
Y5389_ARATH1.582e-4445.05Probable receptor-like protein kinase At5g38990 OS... [more]
Y2393_ARATH2.066e-4443.84Probable receptor-like protein kinase At2g39360 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34202F12EF PostHarveN Citrus clementina cDNA clone C34202F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931929 ID=FC931929; Name=FC931929; organism=Citrus clementina; type=EST; length=719bp
CATGCCTCAGTTTTTCTCTGATTTCTCTTTTTCAGAGATTGAGGGAGCAA
CTCATAACTTTGATCCTTCCCTGAAGATTGGGGAAGGAGGATATGGGAGC
ATTTACAAAGGTCTCCTGCGACATATGCAAGTGGCTATTAAGATGTTGCA
CCCTCATAGCTTGCAAGGACCCTCTGAATTTCAACAGGAGATTGATATTC
TGAGTAAGATAAGACATCCAAATCTTGTAACTCTTGTTGGAGCCTGTCCA
GAAGTGTGGACTCTGGTCTACGAGTATCTGCCCAATGGCAGCCTTGAAGA
CCGACTCAGCTGCAAGGATAACTCTCCCCCTTTATCCTGGCAAACTCGAA
TCCGCATTGCCACTGAGCTATGCTCTGTCCTTATCTTTCTCCATTCTTGT
AAACCTCACAGCATTGTGCATGGTGATTTGAAACCTGCCAATATTCTTCT
TGATGCTAACTTTGTTAGCAAACTTAGTGACTTTGGTATCTCTCGCTTTC
TATCTCAAAATGAAATTTCAAGTAACAACACAACACTGTGTTGTAGGACT
GACCCTAAGGGTACATTTGCGTATATGGATCCAGAGTTTCTGGCATCAGG
GGAACTTACTCCGAAGTCAGGTGTTTACTCATTTGGGATTATTTTATTGC
GCTTTTTGACTGGGAGACCAGCTTTGGGGATAACAAGGAAGTGCAGTATG
CATTAGATACAGGAAACTG
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