FC931937

Overview
NameFC931937
Unique NameFC931937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9401 contig Ccv1_Contig9401:68..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931937 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.394e-70
Identity = 142/227 (62.56%), Postives = 167/227 (73.57%), Query Frame = 3
Query:   12 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRS----SKNNVTTKAFFFNKPSSQPDSSRPANNKVQELYVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLP 677
            ++A SL+ I                  LLGF  SF    +NL +S+   D S RS    SKN   T+AFF+N    + ++SRP+  K+QEL VYE+NE DRNSPA+LKL +KP  L +GDLVPFTNKLYTGDL+KR+GITAGLCVLI+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYEDT+LAVTGGSGIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP
Sbjct:    5 SAAMSLESISMTTLNNLSRNHQSHRSSLLGFSRSF----QNLGISSNGPDFSSRSRSTTSKNLNVTRAFFWNW-GKKTENSRPS--KIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLP 224          
BLAST of FC931937 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.197e-67
Identity = 134/196 (68.37%), Postives = 150/196 (76.53%), Query Frame = 3
Query:   96 LGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNK-PSSQPDSSRPANNKVQELYVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGV-ADLP 677
            LGF  SF     N  +S+    +S R+     +T  FF     SS  D SRP   K+QEL VYE NE DRNSPA+LKL +KP+ L +GDLVPFTNKLYTGDL KRIGITAGLCVLI+H PEKKGDRFEA YSFYFGDYGHISVQG YLTYEDT+LA+TGGSG+FEG YGQVKL Q+V+P KLFYTFYLKGV ADLP
Sbjct:   31 LGFSRSF----HNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPT--KIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLP 220          
BLAST of FC931937 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.199e-59
Identity = 129/226 (57.08%), Postives = 153/226 (67.70%), Query Frame = 3
Query:   12 ASASSLKPIXXXXXXXXXXXXXXETQRLLGFKSSFSSHHRNLSLSTTHQDVSRRSS---KNNVTTKAFFFNKPSSQPDSSRPANNKVQELYVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLP 677
            +SA SL+ I                  LLG   SF    +NL +S+   D S  SS   K N+T         S   +   P  +KVQEL VYEINE DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEKKG+RFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP
Sbjct:    3 SSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSF----QNLGISSNGSDFSYPSSFTAKKNLTASRAL----SQNGNIENPRPSKVQELSVYEINELDRHSPKILK-NAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLP 219          
BLAST of FC931937 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.858e-58
Identity = 118/196 (60.20%), Postives = 143/196 (72.96%), Query Frame = 3
Query:   93 LLGFKSSFSSHHRNLSLSTTHQDVSRRSSKNNVTTKAFFFNKPSSQPDSSRPANNKVQELYVYEINERDRNSPAILKLSQKPEHLTIGDLVPFTNKLYTGDLQKRIGITAGLCVLIKHEPEKKGDRFEAIYSFYFGDYGHISVQGAYLTYEDTYLAVTGGSGIFEGVYGQVKLHQIVFPYKLFYTFYLKGVA-DLP 677
            LLGF  SF +   + +   +    S    K    T+A   N  +++     P  +KVQEL VYEIN+ DR+SP ILK +       +GDLVPFTNKLYTGDL+KR+GITAGLCV+I+H PEK GDRFEA YSFYFGDYGH+SVQG YLTYED++LA+TGG+GIFEG YGQVKL Q+V+P KLFYTFYLKG+A DLP
Sbjct:   30 LLGFSKSFQNFGISSNGPGSSSPTSFTPKKKLTPTRALSQNLGNTE----NPRPSKVQELSVYEINDLDRHSPKILK-NAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLP 220          
The following BLAST results are available for this feature:
BLAST of FC931937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC3_ARATH4.394e-7062.56Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC4_ARATH1.197e-6768.37Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH1.199e-5957.08Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC1_ARATH3.858e-5860.20Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC34202G08EF PostHarveN Citrus clementina cDNA clone C34202G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931937 ID=FC931937; Name=FC931937; organism=Citrus clementina; type=EST; length=678bp
GATCAATAATGGCCTCTGCAAGCTCTCTCAAGCCCATCTCTTATTCTCTG
AACCTCCCTAACTCGAGATCCTCTTCTTCCGAAACCCAAAGGTTGCTAGG
TTTCAAATCATCTTTTTCCTCTCATCATCGAAACCTCAGTCTCTCAACAA
CCCACCAAGATGTCTCAAGAAGAAGCTCCAAGAACAACGTCACCACCAAA
GCTTTCTTCTTCAACAAACCCAGCAGCCAACCAGATTCTTCCAGGCCTGC
TAATAATAAGGTTCAAGAACTGTACGTGTATGAGATCAACGAGCGGGACA
GAAACAGCCCGGCAATTCTGAAGCTAAGCCAAAAGCCTGAACATCTCACA
ATCGGCGACCTTGTGCCCTTCACGAACAAGCTCTACACCGGCGACTTACA
GAAGCGCATTGGCATCACGGCGGGGCTCTGCGTGTTGATCAAGCACGAAC
CGGAGAAGAAGGGTGACCGGTTTGAAGCGATTTACAGCTTCTACTTCGGT
GACTACGGTCACATATCCGTGCAGGGAGCTTATTTGACTTACGAAGACAC
GTACTTGGCCGTCACCGGTGGCTCCGGGATCTTTGAGGGCGTGTACGGAC
AAGTCAAGTTGCATCAAATTGTTTTCCCTTACAAGTTGTTTTACACTTTT
TACTTGAAGGGTGTCGCTGACTTGCCGC
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