FC931938

Overview
NameFC931938
Unique NameFC931938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig317 contig Ccv1_Contig317:47..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931938 vs. ExPASy Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 268.085 bits (684), Expect = 3.260e-71
Identity = 128/168 (76.19%), Postives = 146/168 (86.90%), Query Frame = 2 
Query:   71 MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXXIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 574
            MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPEPIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEA              IA+V+E+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct:    1 MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168
The following BLAST results are available for this feature:
BLAST of FC931938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP5H_ARATH3.260e-7176.19ATP synthase subunit d, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC34202G09EF PostHarveN Citrus clementina cDNA clone C34202G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931938 ID=FC931938; Name=FC931938; organism=Citrus clementina; type=EST; length=702bp
GGTTTTTTCGGAGCTGAGAAAATCAAAAAATTAAGAGAAAAGAAAAAGGG
AAAATCAGTCGAGAGAGAAAATGAGCGGAGCTGGCAAGAAAATAGCTGAC
GTCGCATTCAAGGCCGGAAGGACCATAGATTGGGAAGGGATGGCGAAGAT
GCTGGTCTCCGATGAGGCGCGCAAGGAGTTCGCCACTCTCCGTCGCGCTT
TCGACGAAGTCAACTCCACTCTTCAGACCAAGTTCAGCCAGGAACCTGAA
CCTATTGACTGGGAGTATTACAGAAAAGGAATTGGCTCTCGCTTGGTGGA
CATGTACAAACAGGCTTATGAAAGCATAGAGGTCCCAAAGTATGTAGACA
AAGTCACCCCTGAATACAAATCTAAGTTTGATGCTTTGCTGGTGGAATTG
AAAGAAGCAGAAGGGAAATCTCTTAAGGAGTCCGAGCGTTTGGAGAAAGA
AATAGCTGAGGTTCGAGAACTGAAGGAAAAGATTAGCACCATGACCGCTG
AGGAATACTTTGAAAAGCATCCGGAACTCAAAAAGAAGTTCGATGATGAA
ATCAGGAATGACTACTGGGGCTATTGATCACACATTTGCTCAATTTAGCA
GCTGCATTTCCTAGCTCGGCCAAGATTTTCTGAAGTTGCCCTGTTTTCCC
AGCTTGTTAAATAATATGATCATTCGAATTGTTTTTGCATAACCTGNTGC
TC
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