FC931939

Overview
NameFC931939
Unique NameFC931939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig672 contig Ccv1_Contig672:139..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB2_DICDI (Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.603e-64
Identity = 130/212 (61.32%), Postives = 157/212 (74.06%), Query Frame = 1
Query:   40 KMNFNNV-KVPKMPGGGAVSAXXXXXXXXXXXXYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            ++NFNN+ K+PK   GG                  A  SL NVEGGHRAI+FNR VG+K+KVY EGTH ++PWFER  IYDVRA+P  + S TGS DLQMV I +RVL++P   QLP IYRTLG++Y+ERVLPSI++E LK++VAQ+NASQLITQRE VSR I K L +RA  FNI LDDVSIT L FG+E+  AIEAKQVA QEAERA+F+
Sbjct:    7 QVNFNNIPKLPKGSFGGGFGLLALGGVGLL-----ALSSLVNVEGGHRAIVFNRFVGIKNKVYNEGTHFIVPWFERAEIYDVRAKPRSISSLTGSKDLQMVNITIRVLSKPKVSQLPAIYRTLGKDYDERVLPSIVNEILKSIVAQFNASQLITQREQVSRLIFKRLVDRAKDFNIELDDVSITHLNFGREYAAAIEAKQVAQQEAERARFL 213          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB2_YEAST (Prohibitin-2 OS=Saccharomyces cerevisiae GN=PHB2 PE=1 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 4.517e-59
Identity = 112/175 (64.00%), Postives = 142/175 (81.14%), Query Frame = 1
Query:  148 HSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            ++L+NV+GGHRAI+++RI GV  +++ EGTH + PW + P+IYDVRA+P  V S TG+ DLQMV I  RVL+RP   QLPTIYRTLG++Y+ERVLPSI++E LKAVVAQ+NASQLITQRE VSR IR+ L  RA+ FNI LDDVSIT +TF  EFT A+EAKQ+A Q+A+RA F+
Sbjct:   56 NALFNVDGGHRAIVYSRIHGVSSRIFNEGTHFIFPWLDTPIIYDVRAKPRNVASLTGTKDLQMVNITCRVLSRPDVVQLPTIYRTLGQDYDERVLPSIVNEVLKAVVAQFNASQLITQREKVSRLIRENLVRRASKFNILLDDVSITYMTFSPEFTNAVEAKQIAQQDAQRAAFV 230          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB2_CAEEL (Mitochondrial prohibitin complex protein 2 OS=Caenorhabditis elegans GN=phb-2 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.928e-58
Identity = 112/178 (62.92%), Postives = 135/178 (75.84%), Query Frame = 1
Query:  136 YAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKF 669
            Y    S++ VE GHRAIMFNRI G+   +Y EG H  IPWF+ P+IYD+RARPN + S TGS DLQMV IGLRVL+RP  + L  IYRTLG+N+ ERVLPSI +E LK VVA++NASQLITQR+ VS  +RK L ERA  FNI LDDVS+T L F  +++ A+EAKQVAAQEA+RA F
Sbjct:   34 YGVAQSMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKDLQMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQVSMLVRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQEAQRATF 211          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB2_SCHPO (Prohibitin-2 OS=Schizosaccharomyces pombe GN=phb2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.113e-57
Identity = 110/178 (61.80%), Postives = 139/178 (78.09%), Query Frame = 1
Query:  136 YAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKF 669
            +A   SL+NV+GGHRAI ++RI G+K+ +YPEGTH +IPW E  + YDVRA+P  + S TG+ DLQMV I  RVL+RP    LP IYRTLG +Y+ERVLPSI++E LK+VVAQ+NASQLITQRE VSR +R+ L +RAA FNI LDDVS+T + F  EFT A+EAKQ+A Q+A+RA F
Sbjct:   30 FAVQTSLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKDLQMVNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRERVSRLVRENLMKRAARFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQRATF 207          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB_RAT (Prohibitin OS=Rattus norvegicus GN=Phb PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.230e-56
Identity = 109/174 (62.64%), Postives = 138/174 (79.31%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP IY ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE VSR++   LTERAA F + LDDVS+T LTFGKEFT A+EAKQVA QEAERA+F+
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFV 199          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB_MOUSE (Prohibitin OS=Mus musculus GN=Phb PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.230e-56
Identity = 109/174 (62.64%), Postives = 138/174 (79.31%), Query Frame = 1
Query:  151 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP IY ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE VSR++   LTERAA F + LDDVS+T LTFGKEFT A+EAKQVA QEAERA+F+
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFV 199          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB2_RAT (Prohibitin-2 OS=Rattus norvegicus GN=Phb2 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.098e-56
Identity = 110/180 (61.11%), Postives = 140/180 (77.78%), Query Frame = 1
Query:  136 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT L+F +E+T A+EAKQVA QEA+RA+F+
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQRAQFL 213          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB2_PONAB (Prohibitin-2 OS=Pongo abelii GN=PHB2 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.098e-56
Identity = 110/180 (61.11%), Postives = 140/180 (77.78%), Query Frame = 1
Query:  136 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT L+F +E+T A+EAKQVA QEA+RA+F+
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQRAQFL 213          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB2_MOUSE (Prohibitin-2 OS=Mus musculus GN=Phb2 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.098e-56
Identity = 110/180 (61.11%), Postives = 140/180 (77.78%), Query Frame = 1
Query:  136 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT L+F +E+T A+EAKQVA QEA+RA+F+
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQRAQFL 213          
BLAST of FC931939 vs. ExPASy Swiss-Prot
Match: PHB2_HUMAN (Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.098e-56
Identity = 110/180 (61.11%), Postives = 140/180 (77.78%), Query Frame = 1
Query:  136 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQEAERAKFI 672
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT L+F +E+T A+EAKQVA QEA+RA+F+
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQEAQRAQFL 213          
The following BLAST results are available for this feature:
BLAST of FC931939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHB2_DICDI1.603e-6461.32Prohibitin-2 OS=Dictyostelium discoideum GN=phbB P... [more]
PHB2_YEAST4.517e-5964.00Prohibitin-2 OS=Saccharomyces cerevisiae GN=PHB2 P... [more]
PHB2_CAEEL2.928e-5862.92Mitochondrial prohibitin complex protein 2 OS=Caen... [more]
PHB2_SCHPO1.113e-5761.80Prohibitin-2 OS=Schizosaccharomyces pombe GN=phb2 ... [more]
PHB_RAT1.230e-5662.64Prohibitin OS=Rattus norvegicus GN=Phb PE=1 SV=1[more]
PHB_MOUSE1.230e-5662.64Prohibitin OS=Mus musculus GN=Phb PE=1 SV=1[more]
PHB2_RAT2.098e-5661.11Prohibitin-2 OS=Rattus norvegicus GN=Phb2 PE=1 SV=... [more]
PHB2_PONAB2.098e-5661.11Prohibitin-2 OS=Pongo abelii GN=PHB2 PE=2 SV=1[more]
PHB2_MOUSE2.098e-5661.11Prohibitin-2 OS=Mus musculus GN=Phb2 PE=1 SV=1[more]
PHB2_HUMAN2.098e-5661.11Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC34202G10EF PostHarveN Citrus clementina cDNA clone C34202G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931939 ID=FC931939; Name=FC931939; organism=Citrus clementina; type=EST; length=673bp
GGACTTGGGTGTAGGGTTTTAGCAGAGCTGTTTCAGGAAAAAATGAACTT
CAACAATGTCAAAGTTCCCAAGATGCCGGGTGGTGGCGCAGTCTCTGCTC
TAATTAAGGTGGGGGTTATTGGTGGGCTTGGTTTGTACGCTGCTACTCAT
AGTCTCTACAATGTCGAGGGAGGGCATAGGGCCATTATGTTCAACCGCAT
AGTTGGTGTCAAAGATAAGGTTTATCCCGAGGGGACGCATCTTATGATTC
CATGGTTTGAGAGGCCTGTCATCTATGATGTTCGTGCACGACCCAACTTA
GTGGAGAGTACTACTGGTAGCCATGATCTTCAGATGGTTAAGATTGGGCT
TAGGGTGCTCACTCGTCCTGTGGCTGACCAGTTGCCTACAATTTATCGAA
CCCTTGGTGAGAACTACAATGAAAGGGTTCTGCCTTCTATCATTCATGAA
ACTTTAAAAGCTGTGGTTGCTCAGTACAATGCCAGCCAGCTTATCACACA
GCGTGAGACTGTAAGTAGGGAAATTCGGAAGATTCTGACTGAGAGGGCAG
CCTATTTCAACATTGCTCTGGATGATGTCTCCATTACGAGCCTTACTTTT
GGCAAGGAATTTACATTTGCCATTGAAGCTAAACAGGTGGCCGCACAAGA
AGCAGAGAGGGCTAAATTTATTG
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