FC931940

Overview
NameFC931940
Unique NameFC931940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15172 contig Ccv1_Contig15172:64..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 337.421 bits (864), Expect = 4.303e-92
Identity = 168/205 (81.95%), Postives = 187/205 (91.22%), Query Frame = 2
Query:   53 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            M GI+RQ+ A  G S + R R  + + R+Y++  K+M VR+ LNSA+DEEMSADPKVF+MGEEVG+YQGAYKI+KGLLEKYGPERV DTPITEAGFTGIGVGAAY GLKPVVEF+TFNFSMQAIDHIINSAAKSNYMS+GQI+VPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVL+PYS+EDARGLLKAAIRDPDPVVFLE
Sbjct:    1 MLGILRQR-AIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLE 204          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.068e-86
Identity = 166/205 (80.98%), Postives = 176/205 (85.85%), Query Frame = 2
Query:   53 MWGIIRQKVAAGGGSPVARIRPVVSNLRNYSSAVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            M G+IR K           IRP  S  R +SSA KQM VR+ LNSALD EMSAD KVFLMGEEVGEYQGAYK++KGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF+TFNFSMQAIDHIINSAAKSNYMS+GQISVPIVFRG NG AAGVGAQHS CYA+WY S PGLKVL P+S+EDARGLLKAAIRDPDPVVFLE
Sbjct:    1 MLGVIRNKT----------IRPSFSAFRFFSSA-KQMTVRDALNSALDVEMSADSKVFLMGEEVGEYQGAYKVTKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLE 194          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.140e-68
Identity = 123/175 (70.29%), Postives = 150/175 (85.71%), Query Frame = 2
Query:  143 SSAVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            S+ VK+M VR+ LNSA++EEM  D +VFL+GEEV +Y GAYKIS+GLL+K+GP+RV+DTPITE GFTG+  GAA+ GL+P+ EF+TFNFSMQAIDHI+NSAA++ YMS G  + PIVFRGPNG AA V AQHSQ +A WY S+PGLKV+SPYS+EDARGLLKAAIRDP+PVV LE
Sbjct:   32 SNGVKEMTVRDALNSAMEEEMKRDDRVFLIGEEVAQYNGAYKISRGLLDKFGPKRVIDTPITEMGFTGLATGAAFAGLRPICEFMTFNFSMQAIDHIVNSAARTLYMSGGIQACPIVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLE 206          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 2.540e-68
Identity = 125/191 (65.45%), Postives = 153/191 (80.10%), Query Frame = 2
Query:   95 SPVARIRPVVSNLRNYSSAVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            +P + +RP  +      S+ K M VRE LNSA+ EE+  D  VFL+GEEV +Y GAYK+SKGLL+++G  RV+DTPITE GFTG+ VGAA  GLKP+VEF++FNFSMQAIDH++NSAAK++YMS G     +VFRGPNGAA GVGAQHSQ ++ WY S+PGLKVL PYS+EDARGLLKAAIRDP+PVVFLE
Sbjct:   17 APTSFVRPSAAAAALRFSSTKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLE 207          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.791e-67
Identity = 117/173 (67.63%), Postives = 149/173 (86.13%), Query Frame = 2
Query:  149 AVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            A K++ VR+ +NSALDEE++ D KVF+MGEEV +Y GAYKI+KGL +KYG +R++DTPITEAGF GIGVGAA  G +P++EF+TFNF+MQAIDHIINS+AK++YMS G++  PIV+RGPNG    VGAQHSQC+AAWY SVPGLKV++P+S+ D RGLLK+AIRD +PVV+LE
Sbjct:   25 ATKEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLE 197          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 8.172e-67
Identity = 123/173 (71.10%), Postives = 146/173 (84.39%), Query Frame = 2
Query:  149 AVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            A   M VR+ LN A+DEE+  D +VFLMGEEV +Y GAYKISKGL +K+G +RV+DTPITE GF GI VGAA+ GL+P+ EF+TFNFSMQAID IINSAAK+ YMS+G++ VPIVFRGPNGAAAGV AQHSQ ++AWYA  PGLKV+ PYS+EDA+GLLKAAIRD +PVVFLE
Sbjct:   21 AASTMTVRDALNQAMDEEIKRDDRVFLMGEEVAQYDGAYKISKGLWKKHGDKRVVDTPITEMGFAGIAVGAAFAGLRPICEFMTFNFSMQAIDQIINSAAKTYYMSAGRVPVPIVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLE 193          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.180e-65
Identity = 118/169 (69.82%), Postives = 144/169 (85.21%), Query Frame = 2
Query:  161 MMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            M VRE L  A+ EEM A+  VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPITE GF G+GVGAA  GL+P+VEF+TFNF+MQAID IINSAAK+ YMS GQ+  PIVFRGP+GAAA V AQHSQCYAAWY+ +PGLKV+ PY++ DA+GLLKAAIRDP+PV+FLE
Sbjct:  138 MTVREALRDAMAEEMRANEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPITEHGFAGVGVGAAMTGLRPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGAPIVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLE 306          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 7.649e-65
Identity = 117/173 (67.63%), Postives = 143/173 (82.66%), Query Frame = 2
Query:  149 AVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            A  Q+ VRE +N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EF+TFNFSMQAID +INSAAK+ YMS G  SVPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP+SSEDA+GL+K+AIRD +PVV LE
Sbjct:   29 AALQVTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLE 201          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 2.225e-64
Identity = 115/173 (66.47%), Postives = 143/173 (82.66%), Query Frame = 2
Query:  149 AVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            A  Q+ VRE +N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EF+TFNFSMQAID +INSAAK+ YMS+G   VPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LE
Sbjct:   29 AAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLE 201          
BLAST of FC931940 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.906e-64
Identity = 115/173 (66.47%), Postives = 143/173 (82.66%), Query Frame = 2
Query:  149 AVKQMMVRETLNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFVTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE 667
            A  Q+ VRE +N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EF+TFNFSMQAID +INSAAK+ YMS+G   VPIVFRGPNGA+AGV AQHSQC+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LE
Sbjct:   29 AAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLE 201          
The following BLAST results are available for this feature:
BLAST of FC931940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_ARATH4.303e-9281.95Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PEA2.068e-8680.98Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO1.140e-6870.29Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST2.540e-6865.45Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI4.791e-6767.63Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL8.172e-6771.10Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RHIME1.180e-6569.82Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BOVIN7.649e-6567.63Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT2.225e-6466.47Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE2.906e-6466.47Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionC34202G11EF PostHarveN Citrus clementina cDNA clone C34202G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931940 ID=FC931940; Name=FC931940; organism=Citrus clementina; type=EST; length=694bp
GGATAACTTTCACTTCTGGTAATCTCGGATTTTCATTGAAACAGAGTTGA
AGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGGAGGAGGTTCTCCT
GTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAAACTACTCATCTGC
AGTTAAACAGATGATGGTGAGAGAGACTTTAAACTCTGCTCTTGATGAGG
AGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTGGGGAA
TATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGGCCC
TGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGATTG
GAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCGTGACA
TTTAACTTCTCTATGCAGGCAATTGACCACATCATTAATTCTGCTGCAAA
ATCAAATTACATGTCTTCTGGCCAAATATCGGTTCCTATCGTCTTCAGAG
GGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAATGTTAC
GCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCATACAG
TTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGGATC
CTGTTGTTTTTCTTGAAATGAGTTGTTATATGGTGAGTCATTCC
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