FC931942

Overview
NameFC931942
Unique NameFC931942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5022 contig Ccv1_Contig5022:182..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: RAVL1_ARATH (AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.082e-54
Identity = 114/172 (66.28%), Postives = 131/172 (76.16%), Query Frame = 3
Query:  123 SIPPTKSPESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHGESDGVATA-FGSERVLK 635
            S PP  S   L R+GSG SSV+LDSE GVE ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAA +YDIA +RFRGRDAVTNFK      +  D  D E AFL +HSK+EIVDMLRKHTY DE EQS+R + ++ +GKR        G+ TA +G++ VL+
Sbjct:   33 SSPPATSMR-LYRMGSGGSSVVLDSENGVETESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAASSYDIAVRRFRGRDAVTNFK------SQVDGNDAESAFLDAHSKAEIVDMLRKHTYADEFEQSRRKF-VNGDGKR-------SGLETATYGNDAVLR 189          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: RAV1_ARATH (AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.451e-53
Identity = 117/189 (61.90%), Postives = 134/189 (70.90%), Query Frame = 3
Query:   48 MDGSCMDEXXXXXXXXXXPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGKRVIKHG--ESDGVAT 608
            M+ S +DE           P   PA      S  +L R+GSG SSV+LDSE GVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAARAYD+A  RFR RDAVTNFK +       DE +++  FL+SHSKSEIVDMLRKHTYN+ELEQSKR    + N  R +      +DGV+T
Sbjct:    1 MESSSVDESTTSTGSICETPAITPAK---KSSVGNLYRMGSG-SSVVLDSENGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAVHRFRRRDAVTNFKDV-----KMDEDEVD--FLNSHSKSEIVDMLRKHTYNEELEQSKRRRNGNGNMTRTLLTSGLSNDGVST 178          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: RAV2_ARATH (AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana GN=RAV2 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 5.887e-53
Identity = 112/178 (62.92%), Postives = 128/178 (71.91%), Query Frame = 3
Query:   48 MDGSCMDEXXXXXXXXXXPPITFPASIPPTKSPESLCRVGSGASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRN---YGLDANGKR 572
            MD SC+DE                 S PP  +   L R+GSG SSV+LD E G+E ESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNE+EEAAR+YDIAA RFRGRDAV NFK +       ++GD  +AFL +HSK+EIVDMLRKHTY DELEQ+ +      +DANGKR
Sbjct:    1 MDSSCIDEISSSTSESFSATTAKKLSPPPAAALR-LYRMGSGGSSVVLDPENGLETESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEQEEAARSYDIAACRFRGRDAVVNFKNV------LEDGD--LAFLEAHSKAEIVDMLRKHTYADELEQNNKRQLFLSVDANGKR 169          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: RAVL4_ARATH (AP2/ERF and B3 domain-containing transcription factor ARF14 OS=Arabidopsis thaliana GN=ARF14 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.357e-49
Identity = 111/156 (71.15%), Postives = 125/156 (80.13%), Query Frame = 3
Query:  123 SIPPTKS--PESLC-RVGSGASSVILDSEAGVE----AESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNYGLDANGK 569
            SIP  KS  P SL  R+GSG +SV+LDSE GVE    AESRKLPSS++KGVVPQPNGRWGAQIYEKHQRVWLGTFNEE+EAARAYD+AA RFRGRDAVTNFK      T+ +E   E+ FL++HSKSEIVDMLRKHTY +EL+Q KRN   D NGK
Sbjct:   16 SIPARKSSSPASLLYRMGSG-TSVVLDSENGVEVEVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAHRFRGRDAVTNFKD-----TTFEE---EVEFLNAHSKSEIVDMLRKHTYKEELDQRKRN--RDGNGK 160          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: Y5498_ORYSJ (AP2/ERF and B3 domain-containing protein Os05g0549800 OS=Oryza sativa subsp. japonica GN=Os05g0549800 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.825e-44
Identity = 92/143 (64.34%), Postives = 111/143 (77.62%), Query Frame = 3
Query:  147 ESLCRVGSGASSVILDSEAGVEAESR---------KLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNY 548
            ++L RVGSGAS+V+  +E G EA+S          KLPSSKYKGVVPQPNGRWGAQIYE+HQRVWLGTF  E EAARAYD+AAQRFRGRDAVTNF+ ++    S  E  +E+ FL+S SK+E+VDMLRKHTY +EL Q+KR +
Sbjct:   28 KALQRVGSGASAVMDAAEPGAEADSGGERRGGGGGKLPSSKYKGVVPQPNGRWGAQIYERHQRVWLGTFTGEAEAARAYDVAAQRFRGRDAVTNFRPLA---ESDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAF 167          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: Y1934_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica GN=Os01g0693400 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.777e-41
Identity = 87/148 (58.78%), Postives = 108/148 (72.97%), Query Frame = 3
Query:  159 RVGSGASSVILDSEAGVEAESR------------------KLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKRNY 548
            R+GSGAS+V+  +E G EA+S                   KLPSSK+KGVVPQPNGRWGAQIYE+HQRVWLGTF  E++AARAYD+AAQRFRGRDAVTNF+ ++    +  +   E+ FL++ SK+E+VDMLRKHTY DEL QSKR +
Sbjct:   36 RMGSGASAVVDAAEPGAEADSGSGGRVCGGGGGGAGGAGGKLPSSKFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYDVAAQRFRGRDAVTNFRPLA---EADPDAAAELRFLATRSKAEVVDMLRKHTYFDELAQSKRTF 180          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: Y1407_ORYSJ (Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica GN=Os01g0140700 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.539e-36
Identity = 83/155 (53.55%), Postives = 98/155 (63.23%), Query Frame = 3
Query:  156 CRVGSGASSVILDSEAGVEAESRKL--------------------------PSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQSKR 542
            C  GSG SS   DS+   E E                              PSS+YKGVVPQPNGRWGAQIYE+H RVWLGTF +EE AARAYD+AA RFRGRDAVTN +  +  G S+     E+AFL++HSK+E+VDMLRKHTY+DEL+Q  R
Sbjct:   12 CNSGSGGSSSTTDSKQEEEEEEELAAMEEDELIHVVQAAELRLPSSTTATRPSSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRFRGRDAVTN-RAPAAEGASAG----ELAFLAAHSKAEVVDMLRKHTYDDELQQGLR 161          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: Y1410_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0141000 OS=Oryza sativa subsp. japonica GN=Os01g0141000 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.611e-34
Identity = 76/133 (57.14%), Postives = 92/133 (69.17%), Query Frame = 3
Query:  174 ASSVILDSEAGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDELEQS-KRNYGLDANGK 569
            A  V+    A   A+     SS+YKGVVPQPNGRWGAQIYE+H RVWLGTF +EE AARAYD+AA R+RGRDA TNF   + +         E+AFL++HSK+EIVDMLRKHTY DEL Q  +R  G+ A  +
Sbjct:   50 ADEVVTSRPAAAAAQQ----SSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRYRGRDAATNFPGAAASAA-------ELAFLAAHSKAEIVDMLRKHTYADELRQGLRRGRGMGARAQ 171          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  204 GVEAESRKLPSSKYKGVVPQPNGRWGAQIYE--KHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNF------KQMSCAGT-----SSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDEL 527
            G  ++ +K  SS+YKG+  +P GRW A+I +  K  RVWLGTFN  EEAARAYD+ A+R RG  A  NF      K+ + A T      + E D+++A +SS   S  +D L +    D L
Sbjct:   12 GSASDGKKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEADLDVAVVSSAPSSSCLDFLWEENNPDTL 132          
BLAST of FC931942 vs. ExPASy Swiss-Prot
Match: RAVL2_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana GN=At1g50680 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  240 KYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEEEAARAYDIAAQRFRGRDAVTNFKQMSCAGTSSDEGDIEMAFLSSHSKSEIVDMLRKHTYNDEL 527
            KYKGVV Q NG WGAQIY  H+R+WLGTF   +EAA AYD A+ + R  DA  + +    +  + +E D +  + +    + I D   +H + D L
Sbjct:   27 KYKGVVQQQNGHWGAQIYADHKRIWLGTFKSADEAATAYDSASIKLRSFDA-NSHRNFPWSTITLNEPDFQNCYTTETVLNMIRDGSYQHKFRDFL 121          
The following BLAST results are available for this feature:
BLAST of FC931942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RAVL1_ARATH9.082e-5466.28AP2/ERF and B3 domain-containing transcription rep... [more]
RAV1_ARATH3.451e-5361.90AP2/ERF and B3 domain-containing transcription fac... [more]
RAV2_ARATH5.887e-5362.92AP2/ERF and B3 domain-containing transcription rep... [more]
RAVL4_ARATH1.357e-4971.15AP2/ERF and B3 domain-containing transcription fac... [more]
Y5498_ORYSJ3.825e-4464.34AP2/ERF and B3 domain-containing protein Os05g0549... [more]
Y1934_ORYSJ1.777e-4158.78AP2/ERF and B3 domain-containing protein Os01g0693... [more]
Y1407_ORYSJ6.539e-3653.55Putative AP2/ERF and B3 domain-containing protein ... [more]
Y1410_ORYSJ1.611e-3457.14AP2/ERF and B3 domain-containing protein Os01g0141... [more]
ERF73_ARATH8.310e-1541.32Ethylene-responsive transcription factor ERF073 OS... [more]
RAVL2_ARATH4.560e-1340.63AP2/ERF and B3 domain-containing transcription fac... [more]

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Properties
Property NameValue
Genbank descriptionC34202H01EF PostHarveN Citrus clementina cDNA clone C34202H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931942 ID=FC931942; Name=FC931942; organism=Citrus clementina; type=EST; length=649bp
ACCAGAACCTCTTGTAGACACACATAACACACATGAATTGCGAAGAAATG
GACGGAAGTTGCATGGACGAAAGCACGACAACTGATTCAGCATCAACATC
CCCGCCAATAACTTTCCCTGCGAGCATCCCGCCGACCAAGTCGCCGGAGA
GTCTTTGCCGAGTCGGCAGCGGAGCCTCCAGCGTGATTCTCGACTCGGAA
GCCGGCGTGGAGGCCGAGTCGAGGAAGCTCCCGTCTTCCAAATACAAAGG
GGTGGTCCCACAGCCGAATGGGAGGTGGGGCGCCCAGATATACGAGAAGC
ACCAAAGGGTCTGGCTCGGCACCTTCAACGAGGAAGAGGAAGCTGCCAGG
GCCTACGATATCGCTGCGCAGCGTTTCCGCGGACGCGATGCCGTCACAAA
CTTCAAGCAAATGTCTTGTGCTGGAACGTCCTCCGACGAGGGTGATATCG
AAATGGCGTTCTTGAGCTCCCACTCCAAGTCCGAGATCGTCGATATGCTG
AGGAAGCACACTTACAACGACGAGCTCGAGCAGAGCAAAAGAAACTACGG
CCTCGATGCCAACGGCAAGCGTGTAATCAAACACGGGGAAAGTGATGGTG
TTGCCACTGCCTTCGGTTCGGAACGGGTCCTTAAGCGCGTGACCAGCTT
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