FC931944

Overview
NameFC931944
Unique NameFC931944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9348 contig Ccv1_Contig9348:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931944 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 2 
Query:   56 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 418
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of FC931944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.193e-2853.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionC34202H03EF PostHarveN Citrus clementina cDNA clone C34202H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931944 ID=FC931944; Name=FC931944; organism=Citrus clementina; type=EST; length=706bp
GACTGAAGAAGAGGTTAAATATTTAGAAACTAGCAGCTAAACTGTAAATT
TAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCT
GATCGTGGCCTAGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCAGT
CAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTC
TGTCAATGCCGGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGACG
ACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCC
CGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGC
CCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGGAG
ACTAGGAGCAAGCATCATCACTGAGTGGATGATACGCTCCAGCGATGTAA
ATGAATGGGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGTA
GATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGTT
AATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAAT
GCTGCTGACTAAAAGTAAACTAAAGACTGTGATGTTTTTATATCATATAA
TTTAATAATTGTATGTGATGTGAGGATTGCTAAGCTGTGGGCGGAGATGA
AAGTTG
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