FC931949
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum GN=med6 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 9.791e-27 Identity = 58/130 (44.62%), Postives = 85/130 (65.38%), Query Frame = 3 Query: 129 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518 D+T + +RD LWL YPL+ I YF+ S FYD+ CNNEQL+M+ LD+S L M G+EY L + +EP F+I KQ R P V YYV++G+IYQAP+L VF +R+ +++ ++ +AF + +S Sbjct: 65 DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDGLEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISS 191
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_PONAB (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii GN=MED6 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.463e-22 Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 3 Query: 129 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A S Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMS 135
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_MOUSE (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus GN=Med6 PE=2 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.463e-22 Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 3 Query: 129 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A S Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMS 135
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_HUMAN (Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens GN=MED6 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.463e-22 Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 3 Query: 129 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A S Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMS 135
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_BOVIN (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus GN=MED6 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22 Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = 3 Query: 129 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A S Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMS 135
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_ANOGA (Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae GN=MED6 PE=3 SV=3) HSP 1 Score: 105.145 bits (261), Expect = 3.259e-22 Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 3 Query: 141 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518 I + D W+ L+ + DYF+ + FYDRTCNNE +RM+ + L+ MTG+EY+ V +P L+VIRKQ R P + TPM YY++ G++YQAP L +VF++RI +H++Q AF A+S Sbjct: 19 ISWHDSNWIPV--LNPGNVMDYFSEKSNPFYDRTCNNEIVRMQR---QSLELLNNMTGVEYIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNSRILSTVHHLQTAFDEASS 141
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_DANRE (Mediator of RNA polymerase II transcription subunit 6 OS=Danio rerio GN=med6 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.796e-20 Identity = 52/132 (39.39%), Postives = 82/132 (62.12%), Query Frame = 3 Query: 129 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518 ++ GI + D W+ L+ + + +YF+ + FYDRTCNNE ++M+ + L+++ G+EY+L EP L++IRKQ+R P +V P+ YY++ G +YQAP L +V S+R A+H IQ AF A S Sbjct: 9 NLLGISWVDSGWVPI--LNPSNVLEYFSERSNPFYDRTCNNEVVKMQRS---TLDHLTQLVGVEYILLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSRALSAVHGIQSAFDEAMS 135
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_DROME (Mediator of RNA polymerase II transcription subunit 6 OS=Drosophila melanogaster GN=MED6 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19 Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 3 Query: 180 LDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518 L + DYF FYD CNNE +RM+ + P L M G+EY+L V EP L+VIRKQ R P + TP+ YY++ G++Y+AP L NV ++RI + +Q AF A+S Sbjct: 24 LSPQTVMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYIIGGTVYKAPDLANVINSRILNTVVNLQSAFEEASS 135
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_CANAL (Mediator of RNA polymerase II transcription subunit 6 OS=Candida albicans GN=MED6 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.851e-17 Identity = 49/149 (32.89%), Postives = 82/149 (55.03%), Query Frame = 3 Query: 180 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLGKIGYVDAEHDGGTPLHSKAGK 590 L+ N + +YF+LS FYDRT NN+ L M+ S H S+LS+MTGIE++++ EP ++IRKQKR P+ + YY++ ++YQAP++ +V S+R+ ++ I+ + T + + D H +H + K Sbjct: 20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPPGVSFHQYFQSRLSEMTGIEFVIAYTKEPDFWIIRKQKRQDPQNTVTLQDYYIIGANVYQAPRIYDVLSSRLLASVLSIKNS-TDLLNDMTSYHISDGGHSYINSIHGSSSK 167
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_YARLI (Mediator of RNA polymerase II transcription subunit 6 OS=Yarrowia lipolytica GN=MED6 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16 Identity = 56/167 (33.53%), Postives = 87/167 (52.10%), Query Frame = 3 Query: 147 FRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS---------IHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTA---ASKLGKIGY-------VDAEHDGGTPLHSKA 584 +R W+ + L + + DYF S FYDR NN+ LRM++ + P Q L KMTGIE++++ V EP L+VI+KQ R P++ TP+ TY+V++ ++Y AP + + +R+ ++++A A S GY A D TP SKA Sbjct: 9 WRSPEWIQAHQGLRTDNVLDYFAESPFYDRVSNNQVLRMQTQFNQQQTGQLTPQHFEQELQKMTGIEFVITHVREPDLWVIKKQNRLNPQQTTPISTYFVINENVYMAPTVAAIMQSRVLSTSMFLKRALEEAIELPSYSPSQGYTYEDSQLTTAGDDDSTPQASKA 175 The following BLAST results are available for this feature:
BLAST of FC931949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931949 ID=FC931949; Name=FC931949; organism=Citrus clementina; type=EST; length=663bpback to top |