FC931949

Overview
NameFC931949
Unique NameFC931949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15419 contig Ccv1_Contig15419:1..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum GN=med6 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.791e-27
Identity = 58/130 (44.62%), Postives = 85/130 (65.38%), Query Frame = 3
Query:  129 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518
            D+T + +RD LWL  YPL+   I  YF+ S FYD+ CNNEQL+M+    LD+S L  M G+EY L + +EP  F+I KQ R  P  V     YYV++G+IYQAP+L  VF +R+ +++ ++ +AF + +S
Sbjct:   65 DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDGLEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISS 191          
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_PONAB (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii GN=MED6 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.463e-22
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  129 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE ++M+    L +  L++M GIEY+L    EP LF+IRKQ+R  P +V P+  YY++ G IYQAP L +V ++R+  A+H IQ AF  A S
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMS 135          
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_MOUSE (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus GN=Med6 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.463e-22
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  129 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE ++M+    L +  L++M GIEY+L    EP LF+IRKQ+R  P +V P+  YY++ G IYQAP L +V ++R+  A+H IQ AF  A S
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMS 135          
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_HUMAN (Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens GN=MED6 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.463e-22
Identity = 57/132 (43.18%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  129 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE ++M+    L +  L++M GIEY+L    EP LF+IRKQ+R  P +V P+  YY++ G IYQAP L +V ++R+  A+H IQ AF  A S
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMS 135          
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_BOVIN (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus GN=MED6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22
Identity = 56/132 (42.42%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  129 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE ++M+    L +  L++M G+EY+L    EP LF+IRKQ+R  P +V P+  YY++ G IYQAP L +V ++R+  A+H IQ AF  A S
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMS 135          
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_ANOGA (Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae GN=MED6 PE=3 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 3.259e-22
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 3
Query:  141 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518
            I + D  W+    L+   + DYF+   + FYDRTCNNE +RM+      +  L+ MTG+EY+   V +P L+VIRKQ R  P + TPM  YY++ G++YQAP L +VF++RI   +H++Q AF  A+S
Sbjct:   19 ISWHDSNWIPV--LNPGNVMDYFSEKSNPFYDRTCNNEIVRMQR---QSLELLNNMTGVEYIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNSRILSTVHHLQTAFDEASS 141          
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_DANRE (Mediator of RNA polymerase II transcription subunit 6 OS=Danio rerio GN=med6 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.796e-20
Identity = 52/132 (39.39%), Postives = 82/132 (62.12%), Query Frame = 3
Query:  129 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518
            ++ GI + D  W+    L+ + + +YF+   + FYDRTCNNE ++M+      +  L+++ G+EY+L    EP L++IRKQ+R  P +V P+  YY++ G +YQAP L +V S+R   A+H IQ AF  A S
Sbjct:    9 NLLGISWVDSGWVPI--LNPSNVLEYFSERSNPFYDRTCNNEVVKMQRS---TLDHLTQLVGVEYILLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSRALSAVHGIQSAFDEAMS 135          
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_DROME (Mediator of RNA polymerase II transcription subunit 6 OS=Drosophila melanogaster GN=MED6 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 3
Query:  180 LDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAAS 518
            L    + DYF      FYD  CNNE +RM+ + P     L  M G+EY+L  V EP L+VIRKQ R  P + TP+  YY++ G++Y+AP L NV ++RI   +  +Q AF  A+S
Sbjct:   24 LSPQTVMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYIIGGTVYKAPDLANVINSRILNTVVNLQSAFEEASS 135          
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_CANAL (Mediator of RNA polymerase II transcription subunit 6 OS=Candida albicans GN=MED6 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.851e-17
Identity = 49/149 (32.89%), Postives = 82/149 (55.03%), Query Frame = 3
Query:  180 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLGKIGYVDAEHDGGTPLHSKAGK 590
            L+ N + +YF+LS FYDRT NN+ L M+            S H    S+LS+MTGIE++++   EP  ++IRKQKR  P+    +  YY++  ++YQAP++ +V S+R+  ++  I+ + T   + +      D  H     +H  + K
Sbjct:   20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPPGVSFHQYFQSRLSEMTGIEFVIAYTKEPDFWIIRKQKRQDPQNTVTLQDYYIIGANVYQAPRIYDVLSSRLLASVLSIKNS-TDLLNDMTSYHISDGGHSYINSIHGSSSK 167          
BLAST of FC931949 vs. ExPASy Swiss-Prot
Match: MED6_YARLI (Mediator of RNA polymerase II transcription subunit 6 OS=Yarrowia lipolytica GN=MED6 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16
Identity = 56/167 (33.53%), Postives = 87/167 (52.10%), Query Frame = 3
Query:  147 FRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS---------IHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTA---ASKLGKIGY-------VDAEHDGGTPLHSKA 584
            +R   W+  +  L  + + DYF  S FYDR  NN+ LRM++         + P    Q L KMTGIE++++ V EP L+VI+KQ R  P++ TP+ TY+V++ ++Y AP +  +  +R+     ++++A   A    S     GY         A  D  TP  SKA
Sbjct:    9 WRSPEWIQAHQGLRTDNVLDYFAESPFYDRVSNNQVLRMQTQFNQQQTGQLTPQHFEQELQKMTGIEFVITHVREPDLWVIKKQNRLNPQQTTPISTYFVINENVYMAPTVAAIMQSRVLSTSMFLKRALEEAIELPSYSPSQGYTYEDSQLTTAGDDDSTPQASKA 175          
The following BLAST results are available for this feature:
BLAST of FC931949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MED6_DICDI9.791e-2744.62Putative mediator of RNA polymerase II transcripti... [more]
MED6_PONAB1.463e-2243.18Mediator of RNA polymerase II transcription subuni... [more]
MED6_MOUSE1.463e-2243.18Mediator of RNA polymerase II transcription subuni... [more]
MED6_HUMAN1.463e-2243.18Mediator of RNA polymerase II transcription subuni... [more]
MED6_BOVIN1.911e-2242.42Mediator of RNA polymerase II transcription subuni... [more]
MED6_ANOGA3.259e-2242.97Mediator of RNA polymerase II transcription subuni... [more]
MED6_DANRE6.796e-2039.39Mediator of RNA polymerase II transcription subuni... [more]
MED6_DROME4.405e-1942.61Mediator of RNA polymerase II transcription subuni... [more]
MED6_CANAL1.851e-1732.89Mediator of RNA polymerase II transcription subuni... [more]
MED6_YARLI1.567e-1633.53Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionC34202H08EF PostHarveN Citrus clementina cDNA clone C34202H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931949 ID=FC931949; Name=FC931949; organism=Citrus clementina; type=EST; length=663bp
TGTCAAACGGTAAAACCCCAAGCTCGAAAACGCACAGCATTCACTCATCA
AACTTAAACATGGCGACGCCACCACCGGGGGCGAACCTCGAGGGCGCACC
ACCGGCGGCCCCACCGCCACCGGGTACGGACATGACGGGGATCTGCTTCA
GGGACCAATTGTGGCTAAACACATACCCACTTGATCGAAACATGATATTT
GATTACTTCACGTTGTCTCTGTTTTATGATAGGACTTGCAACAATGAACA
GCTCAGAATGCGGTCCATCCACCCTCTAGACATCTCTCAACTCTCGAAAA
TGACCGGCATTGAATACATGCTTAGTGAAGTTATGGAGCCCCACCTCTTT
GTTATCCGTAAGCAAAAAAGGGATGGTCCCGAGAAAGTCACACCAATGCT
CACTTATTATGTATTGGATGGTTCAATTTACCAAGCACCACAACTTTGCA
ATGTCTTTTCGGCTAGAATTGGACGGGCTCTCCACTATATACAGAAGGCT
TTTACAACTGCTGCCTCGAAGTTGGGGAAGATTGGATATGTTGATGCTGA
ACATGATGGAGGTACCCCTCTCCACTCAAAGGCTGGTAAAGAGACAATTG
ATTTGAAAGAAGTAAAGCGAGTAGATCAATACTTGCCTCCTTACAGCGCA
AGCTACCACGGCC
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