FC931954

Overview
NameFC931954
Unique NameFC931954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14152 contig Ccv1_Contig14152:330..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 444.891 bits (1143), Expect = 1.881e-124
Identity = 225/229 (98.25%), Postives = 227/229 (99.13%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDV+YNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKT+LAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMA NR DTLD
Sbjct:   80 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 308
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 436.802 bits (1122), Expect = 5.123e-122
Identity = 221/229 (96.51%), Postives = 224/229 (97.82%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQFMEM+DQNN IVGSTTGSNYYVRILSTINRELLKPSASV L RHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKT+LAKAVA+HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMA NR DTLD
Sbjct:   85 GQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLD 313
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 1.398e-111
Identity = 201/229 (87.77%), Postives = 214/229 (93.45%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQF+E VDQN  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDVLPPEADSSI +L+  +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGVL+YGPPG GKT+LAKAVA+HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNVKVIMA NR DTLD
Sbjct:   90 GQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 1.398e-111
Identity = 201/229 (87.77%), Postives = 214/229 (93.45%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQF+E VDQN  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDVLPPEADSSI +L+  +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGVL+YGPPG GKT+LAKAVA+HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNVKVIMA NR DTLD
Sbjct:   90 GQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 402.134 bits (1032), Expect = 1.398e-111
Identity = 201/229 (87.77%), Postives = 214/229 (93.45%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQF+E VDQN  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDVLPPEADSSI +L+  +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGVL+YGPPG GKT+LAKAVA+HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNVKVIMA NR DTLD
Sbjct:   90 GQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 1.398e-111
Identity = 201/229 (87.77%), Postives = 214/229 (93.45%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQF+E VDQN  IVGSTTGSNYYVRILSTI+RELLKP+ASVALH+HSNALVDVLPPEADSSI +L+  +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGVL+YGPPG GKT+LAKAVA+HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNVKVIMA NR DTLD
Sbjct:   90 GQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 2.385e-111
Identity = 201/229 (87.77%), Postives = 214/229 (93.45%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQF+E VDQN GIVGSTTGSNYYVRILSTI+RELLKPSASVALH+HSNALVDVLPPEADSSIS+L   EKPDV Y+DIGG D QKQEIREAVELPLTH ELY+QIGI+PPRGVL+YGPPG GKT+LA AVA+HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN+PAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQT NVKVIMA NR DTLD
Sbjct:   87 GQFLEAVDQNTGIVGSTTGSNYYVRILSTIDRELLKPSASVALHKHSNALVDVLPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLD 315
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.709e-109
Identity = 197/229 (86.03%), Postives = 212/229 (92.58%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQF+E VDQN  IV STTGSNYYVR++STI+RELLKP+ASVALH+HSNALVDVLPP ADSSI +L+  +KPDV Y DIGG DIQKQE+REAVELPLTH ELYKQIGIDPPRGVL+YGPPG GKT+LAKAVA+HTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ VNVKVIMA NR DTLD
Sbjct:   90 GQFLEAVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLD 318
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 3.017e-106
Identity = 190/229 (82.97%), Postives = 212/229 (92.58%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQFME +DQN GIV S+TGSNY VRILST++RE LKPS+SVALHRHSNALVD+LPPEADSSI++L ++EKPDVTY D+GG D+QKQEIREAVELPLT  +LYKQIGIDPPRGVLLYGPPGTGKT+L KAVAN TTA+FIRV GSEFVQKYLGEGPRMVRDVFR+A+EN+PAIIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGF+Q+ NVKVIMA NR DTLD
Sbjct:   91 GQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQSSNVKVIMATNRADTLD 319
[Close]
BLAST of FC931954 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 382.104 bits (980), Expect = 1.498e-105
Identity = 188/229 (82.10%), Postives = 210/229 (91.70%), Query Frame = 2 
Query:    2 GQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTILAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMANNRVDTLD 688
            GQF+E VDQN+ IVGSTTGSNYYVR+LS ++RELLKP  SVALH++SNALVDVLPPEADSSI +L   EKPD++Y DIGG D+QKQE+REAVELPLTH ELY+QIGIDPPRGVL+YGPPG GKT+LAKAVA +T A+FIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN+P+IIFIDE+DAIAT RFDAQTGADREVQRIL+ELLNQMDGFDQ+ NVKVIMA NR DTLD
Sbjct:   86 GQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANTAASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLD 314
The following BLAST results are available for this feature:
BLAST of FC931954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
PRS6B_ARATH1.881e-12498.2526S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS6B_SOLTU5.123e-12296.5126S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS6B_RAT1.398e-11187.7726S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA1.398e-11187.7726S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN1.398e-11187.7726S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN1.398e-11187.7726S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6B_MANSE2.385e-11187.7726S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS6B_MOUSE1.709e-10986.0326S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS6B_ASPNG3.017e-10682.9726S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS6B_CAEEL1.498e-10582.10Probable 26S protease regulatory subunit 6B OS=Cae... [more]

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Properties
Property NameValue
Genbank descriptionC34203A01EF PostHarveN Citrus clementina cDNA clone C34203A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931954 ID=FC931954; Name=FC931954; organism=Citrus clementina; type=EST; length=689bp
CGGACAGTTCATGGAGATGGTGGACCAGAATAACGGCATCGTGGGGTCCA
CCACCGGCTCTAACTACTACGTCAGGATTCTTAGCACTATTAATCGGGAG
TTGTTGAAACCGTCCGCTTCCGTCGCTCTCCACCGTCACTCTAACGCCCT
TGTTGACGTTCTTCCGCCGGAAGCCGATTCCAGTATTTCTCTTCTAAGCC
AGTCCGAGAAGCCCGACGTTACTTATAATGATATTGGAGGATGTGATATT
CAAAAGCAGGAAATTCGTGAGGCTGTGGAGTTACCGCTGACTCACCATGA
GCTATACAAGCAAATTGGTATAGATCCTCCACGTGGTGTTTTACTTTATG
GTCCTCCTGGAACTGGTAAAACTATACTTGCGAAGGCTGTTGCCAATCAT
ACAACTGCAGCATTCATTAGAGTTGTTGGCTCTGAGTTTGTTCAGAAGTA
CCTGGGTGAGGGTCCACGAATGGTTCGGGATGTTTTTCGTCTTGCTAAAG
AGAATGCCCCTGCTATTATTTTTATTGATGAGGTAGATGCTATAGCTACA
GCTAGGTTTGATGCTCAAACTGGAGCTGATAGAGAAGTTCAACGAATCCT
TATGGAACTCCTCAATCAGATGGACGGATTTGATCAGACTGTAAATGTTA
AGGTCATCATGGCAAACAATCGGGTTGACACATTGGACC
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