FC931976

Overview
NameFC931976
Unique NameFC931976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_ORYSJ (FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 6.549e-91
Identity = 144/181 (79.56%), Postives = 156/181 (86.19%), Query Frame = 2
Query:   92 DFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSDVQSDS 634
            DFQNFVN+VND W QPQFK  DLEFD PLRELGFHGVP+KASAFI+PTS+CLVELIETPF+V+TLSEIEIVNLERVG G KNFDM IVFKDFK+DVLRIDSIPS+SLD IKEWLDTTDLKYYESRLNLNWRPILKTI DDP+KFI+DGGWEFLNMEA             GYEPSD + +S
Sbjct:  786 DFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVTLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSTSLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQKFIDDGGWEFLNMEASDSETEETEESDQGYEPSDAEPES 966          

HSP 2 Score: 53.9138 bits (128), Expect = 6.549e-91
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    1 TLGGGKRSAYDPDEVEEEQRERARKNKINM 90
            TLGG +RSA DPDE+EEEQRER RKN+INM
Sbjct:  756 TLGGNRRSALDPDEIEEEQRERDRKNRINM 785          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_MAIZE (FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 1.219e-89
Identity = 142/181 (78.45%), Postives = 155/181 (85.64%), Query Frame = 2
Query:   92 DFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSDVQSDS 634
            DFQNFVN+VND W QPQFK  DLEFD PLRELGFHGVP+KASAFI+PTS+CLVELIETPF+V++LSEIEIVNLERVG G KNFDM IVFKDFK+DVLRIDSIPS+SLD IKEWLDTTDLKYYESRLNLNWRPILKTI DDP+KFI+DGGWEFLNMEA             GY PSD + +S
Sbjct:  786 DFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVSLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSASLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQKFIDDGGWEFLNMEASDSETEDTEESDQGYVPSDAEPES 966          

HSP 2 Score: 53.9138 bits (128), Expect = 1.219e-89
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1
Query:    1 TLGGGKRSAYDPDEVEEEQRERARKNKINM 90
            TLGG +RSA DPDE+EEEQRER RKN+INM
Sbjct:  756 TLGGSRRSALDPDEIEEEQRERDRKNRINM 785          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_ARATH (FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.739e-88
Identity = 134/185 (72.43%), Postives = 155/185 (83.78%), Query Frame = 2
Query:   80 KSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSDVQSDS 634
            K   DF +F NRVND+W  PQF + DLEFDQPLRELGFHGVPHK SAFI+PTSSCLVELIE PF+V++LSEIEIVNLERVG GQKNFDM I+FKDFK+DVLR+DS+P+SSL+GIKEWLDTTD+KYYES+LNLNWR ILKTITDDP+ FI+DGGWEFLN++              GYEPSDV+ +S
Sbjct:  796 KINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFHGVPHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKDVLRVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQSFIDDGGWEFLNLDGSDSESGGSEESDKGYEPSDVEVES 980          

HSP 2 Score: 57.7658 bits (138), Expect = 1.739e-88
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 1
Query:    1 TLGGGKRSAYDPDEVEEEQRERARKNKINM 90
            +LGGG+RSAYDPDE++EEQRER RKNKINM
Sbjct:  770 SLGGGRRSAYDPDEIDEEQRERDRKNKINM 799          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_CRYNE (FACT complex subunit SPT16 OS=Cryptococcus neoformans GN=SPT16 PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.155e-40
Identity = 75/152 (49.34%), Postives = 103/152 (67.76%), Query Frame = 2
Query:   95 FQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFL 550
            F +F  R+       Q + F+LE D P RELGF+GVPHK+   ++PT++CL+ + E PF VITLSE+EIV+LERV  G KNFDM  V +D K+  + I+SIP + LD +KEWLD+ D+   E  +NL+W  I+KT+ +DP  F  +GGW FL
Sbjct:  794 FHDFARRIETA---AQAQQFELEVDVPFRELGFNGVPHKSIVALLPTTNCLIHISELPFTVITLSEVEIVHLERVQFGLKNFDMVFVLQDLKKPPVHINSIPVAHLDNVKEWLDSCDVPISEGPVNLSWPAIMKTVNEDPHAFYAEGGWNFL 942          

HSP 2 Score: 27.335 bits (59), Expect = 1.155e-40
Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 1
Query:    7 GGGKRSAY--DPDEVEEEQRERARKNKIN 87
            GG KR A   D DE+E+EQ +R R+ +++
Sbjct:  763 GGKKRRARYGDEDEIEQEQEDRKRRAELD 791          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_DICDI (FACT complex subunit SPT16 OS=Dictyostelium discoideum GN=spt16 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.627e-39
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = 2
Query:   80 KSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNME 559
            K   DF+ F+ RV ++  +P      LEFD P RELGF+GVP+ ++ FI P+  CL+ ++E PF V+TL ++EI   ER     KNFD++ VFKD+ R  +RI  IP +  + +KEWLD+ ++K+Y+S  N NW+ I+ TI  D +KF +DGGW FL++E
Sbjct:  792 KINNDFKTFIKRVEEIAPEP-----GLEFDVPYRELGFYGVPNVSTVFIQPSVHCLLSILEPPFFVLTLDDVEIACFERAIRSLKNFDLSFVFKDYNRPPIRISVIPRNYFETVKEWLDSFNIKFYQSERNYNWKRIMDTIKSDVKKFHDDGGWSFLDLE 946          

HSP 2 Score: 28.4906 bits (62), Expect = 1.627e-39
Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 1
Query:   37 DEVEEEQRERARKNKIN 87
            DE EEE+RERA K KIN
Sbjct:  778 DEEEEERRERALKEKIN 794          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_YARLI (FACT complex subunit SPT16 OS=Yarrowia lipolytica GN=SPT16 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 73/165 (44.24%), Postives = 110/165 (66.67%), Query Frame = 2
Query:   68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEA 562
            R R++   +F+ F  ++++   +       ++ D P RELGFHGVP +++  + P++ CLV+LI+TPF VITL EIE+ +LERV  G KNFD+  V+KDF R V  I+SIP   LD +K+WL+  ++ Y E  +NLNW  I+KT+  DP++F   GGW FL++E+
Sbjct:  777 RRRLQLDKEFKAFSEKISEASDRK------VDVDTPFRELGFHGVPFRSNVLLQPSADCLVQLIDTPFSVITLGEIELAHLERVQFGLKNFDLVFVYKDFNRPVTHINSIPVDQLDAVKDWLNEVEIPYSEGPVNLNWGSIMKTVVADPQEFFTSGGWSFLDLES 935          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_SCHPO (FACT complex subunit spt16 OS=Schizosaccharomyces pombe GN=spt16 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 74/161 (45.96%), Postives = 107/161 (66.46%), Query Frame = 2
Query:   68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFL 550
            R R +   +F++F  ++ +           +E D P REL F+GVP +++  + PT+ CLV+L +TPF VITL+EIEI +LERV  G KNFD+  +F+DF+R  + I++IP   LD +KEWLD+ D+ +YE  LNLNW  I+KT+ +DP  F E+GGW FL
Sbjct:  778 RRRAQLDREFKSFAEKIAEA------SEGRIELDIPFRELAFNGVPFRSNVLLQPTTDCLVQLTDTPFTVITLNEIEIAHLERVQFGLKNFDLVFIFQDFRRPPIHINTIPMEQLDNVKEWLDSCDICFYEGPLNLNWTTIMKTVNEDPIAFFEEGGWGFL 932          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_GIBZE (FACT complex subunit SPT16 OS=Gibberella zeae GN=SPT16 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 80/187 (42.78%), Postives = 117/187 (62.57%), Query Frame = 2
Query:   68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSDVQS 628
            R R +    FQ F  ++ +  G+ +     +E D P+RELGFHGVP +++ F+ PT+ CL++++E PF+VIT+ E+EI +LERV  G KNFDM  VFKDF R    +++IP   LD +K++LD++D+ Y E  LNLNW  I+KT+T D  +F  DGGW FL  ++             G +PSD +S
Sbjct:  787 RRRAELDRLFQGFAQKIAEA-GRNE----GIEVDMPIRELGFHGVPFRSNVFVQPTTDCLIQVVEPPFMVITIEEVEIAHLERVQFGLKNFDMVFVFKDFTRAPYHVNTIPVEFLDQVKDYLDSSDIAYTEGPLNLNWPTIMKTVTADTHQFFADGGWSFLQADS----------DDDGGDPSDEES 958          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SPT16_CAEBR (FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.051e-38
Identity = 80/187 (42.78%), Postives = 109/187 (58.29%), Query Frame = 2
Query:   68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNMEAXXXXXXXXXXXXXGYEPSDVQS 628
            R R+ +T  F +F  +V+ L           EFD P   LGF GVP +++  + PT+SCLV L E P  ++TLSE+E+V+ ERV L  KNFDM  +FKD+K     +  IP SS+D IKEWL T D+ Y E   +LNW  ++KTITDDPE F E+GGW FL+ E+              Y+P +  +
Sbjct:  772 RRRLNTT--FNSFCEKVSRLTND------QFEFDSPFAGLGFFGVPFRSATTLKPTASCLVNLTEWPPFIVTLSEVELVHFERVSLQLKNFDMVFIFKDYKMKTQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQSLNWAKVMKTITDDPEDFFENGGWTFLDAESEGEDAGDDSDESDAYDPEEADA 950          
BLAST of FC931976 vs. ExPASy Swiss-Prot
Match: SP16H_MOUSE (FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.051e-38
Identity = 78/164 (47.56%), Postives = 109/164 (66.46%), Query Frame = 2
Query:   68 RERIKSTXDFQNFVNRVNDLWGQPQFKAFDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELIETPFVVITLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSSSLDGIKEWLDTTDLKYYESRLNLNWRPILKTITDDPEKFIEDGGWEFLNME 559
            R ++K+   F+NF+ +V  L  +      +LEF+ P R+LGF+G P++++  + PTSS LV   E P  V+TL E+E+++ ERV    KNFDM IV+KD+ + V  I++IP +SLD IKEWL++ DLKY E   +LNW  I+KTI DDPE F E GGW FL  E
Sbjct:  773 RHKLKTA--FKNFIEKVEALTKE------ELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPE 928          
The following BLAST results are available for this feature:
BLAST of FC931976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
SPT16_ORYSJ6.549e-9179.56FACT complex subunit SPT16 OS=Oryza sativa subsp. ... [more]
SPT16_MAIZE1.219e-8978.45FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE... [more]
SPT16_ARATH1.739e-8872.43FACT complex subunit SPT16 OS=Arabidopsis thaliana... [more]
SPT16_CRYNE1.155e-4049.34FACT complex subunit SPT16 OS=Cryptococcus neoform... [more]
SPT16_DICDI1.627e-3945.00FACT complex subunit SPT16 OS=Dictyostelium discoi... [more]
SPT16_YARLI4.190e-3944.24FACT complex subunit SPT16 OS=Yarrowia lipolytica ... [more]
SPT16_SCHPO4.190e-3945.96FACT complex subunit spt16 OS=Schizosaccharomyces ... [more]
SPT16_GIBZE4.190e-3942.78FACT complex subunit SPT16 OS=Gibberella zeae GN=S... [more]
SPT16_CAEBR6.051e-3842.78FACT complex subunit spt-16 OS=Caenorhabditis brig... [more]
SP16H_MOUSE6.051e-3847.56FACT complex subunit SPT16 OS=Mus musculus GN=Supt... [more]

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Properties
Property NameValue
Genbank descriptionC34203C03EF PostHarveN Citrus clementina cDNA clone C34203C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931976 ID=FC931976; Name=FC931976; organism=Citrus clementina; type=EST; length=692bp
ACGCTAGGTGGTGGAAAGAGATCTGCCTATGACCCAGATGAGGTAGAGGA
AGAACAACGTGAGAGGGCGCGAAAGAATAAAATCAACATGNGACTTCCAG
AACTTTGTGAACCGGGTAAATGATCTATGGGGTCAGCCTCAGTTTAAAGC
ATTTGACCTTGAGTTTGACCAGCCTCTGAGGGAGCTTGGTTTCCATGGTG
TTCCCCACAAAGCATCTGCTTTTATTGTCCCAACATCTAGCTGCCTGGTG
GAGCTGATAGAGACACCTTTTGTGGTAATCACTCTAAGCGAGATTGAGAT
AGTGAACCTGGAGAGAGTTGGTCTCGGGCAGAAGAATTTTGATATGACTA
TAGTATTCAAGGACTTCAAGCGTGATGTCCTTCGAATTGATTCTATTCCG
TCTTCATCACTAGATGGAATCAAAGAGTGGCTCGACACTACAGACCTCAA
GTATTATGAGAGTAGATTAAATTTGAACTGGCGGCCTATACTGAAAACCA
TAACTGACGATCCAGAAAAATTCATAGAGGATGGTGGGTGGGAGTTTCTA
AACATGGAAGCCAGTGACTCAGAATCTGAGAACTCACAAGATTCAGATCA
AGGATATGAGCCTTCAGATGTGCAGTCTGACTCGGTATTTGACGATGAGA
ATGACGACAGTGAATCATTAGTGGAGTCAGAGGATGATGAGG
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