FC931987

Overview
NameFC931987
Unique NameFC931987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9269 contig Ccv1_Contig9269:626..1106. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.015e-32
Identity = 68/82 (82.93%), Postives = 70/82 (85.37%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            ADENF KKHTGPGILSMAN GP TNGSQFF+CT  TEWLDGKHVVF QVV  MDVV AIEKVGSSSGRT K VV+ DCGQLS
Sbjct:   91 ADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.856e-32
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            DENF KKHTGPG+LSMAN GPGTNGSQFF+CT  T WLDGKHVVF QVV  MDVV AIEKVGS SG+T KPV IADCGQLS
Sbjct:   70 DENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQLS 150          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.465e-31
Identity = 64/81 (79.01%), Postives = 70/81 (86.42%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            DENFE+KHTGPGILSMAN G  TNGSQFF+CT  T+WLDGKHVVF QVV  +DVV AIEKVGSSSG+  KPVV+ADCGQLS
Sbjct:   92 DENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.499e-31
Identity = 64/80 (80.00%), Postives = 68/80 (85.00%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF KKHTGPGILSMAN GPGTNGSQFF+CT  TEWL+GKHVVF QVV  MDV+   E VGSSSGR +KPVVIADCGQL
Sbjct:   92 DENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.568e-31
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            DENFE+KHTGPGILSMAN G  TNGSQFF+CT  T+WLDGKHVVF QVV  +DVV AIEK+GSSSG+  KPVVIADCG++S
Sbjct:   93 DENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.116e-30
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = 3
Query:    3 ADENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            ADENF K+HTGPGILSMAN G GTNGSQFF+CT  TEWLDGKHVVF +V+  M+VV  IEKVGS SG+T++PV IADCGQLS
Sbjct:   91 ADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.609e-30
Identity = 63/81 (77.78%), Postives = 68/81 (83.95%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            DENF KKHTGPGILSMAN G  TNGSQFF+CT  T WLDGKHVVF QVV  ++VV  IEKVGS SGRT+KPVVIADCGQ+S
Sbjct:   93 DENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.791e-29
Identity = 62/81 (76.54%), Postives = 66/81 (81.48%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            DENF KKHTG GILSMAN GP TNGSQFF+CT  T WLDGKHVVF QVV  +DVV AIEKVGS SG+T+K V I DCGQLS
Sbjct:   92 DENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.980e-28
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQL 245
            DENF KKHTGPGILSM N G  TNGSQFF+CT  T WLDGKHVVF QVV  MDVV  IEKVGS SGRT+K VV  DCGQL
Sbjct:   92 DENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171          
BLAST of FC931987 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.735e-27
Identity = 57/81 (70.37%), Postives = 62/81 (76.54%), Query Frame = 3
Query:    6 DENFEKKHTGPGILSMANGGPGTNGSQFFVCTGNTEWLDGKHVVFSQVV*RMDVV*AIEKVGSSSGRTNKPVVIADCGQLS 248
            DENF  KH GPG+LSMAN GP TNGSQFF+CT  T+WLDGKHVVF  V   MDVV  IE  GS SGRT+K +VI DCGQLS
Sbjct:  127 DENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207          
The following BLAST results are available for this feature:
BLAST of FC931987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CYPH_CATRO1.015e-3282.93Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_ALLCE3.856e-3281.48Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
CP18C_ARATH1.465e-3179.01Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CYPH_SOLLC2.499e-3180.00Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CP19B_ARATH5.568e-3176.54Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CYPH_LUPLU2.116e-3075.61Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19A_ARATH3.609e-3077.78Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP18D_ARATH1.791e-2976.54Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_BRANA1.980e-2876.25Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
PPIF_HUMAN3.735e-2770.37Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionC34203D06EF PostHarveN Citrus clementina cDNA clone C34203D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931987 ID=FC931987; Name=FC931987; organism=Citrus clementina; type=EST; length=481bp
TCGCCGATGAGAACTTCGAGAAGAAGCACACCGGCCCCGGAATCCTCTCC
ATGGCGAATGGCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTAC
GGGCAACACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCAGTCAAGTCG
TCTAACGAATGGACGTCGTCTAGGCCATCGAGAAAGTGGGGTCCAGCTCC
GGAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTA
TATTTGATCATGATAATGATCGCCATCATCACGAGCCGTCTGATCGCGAT
CGTGATGGTGATTATGTTATCTATTATTATGTGGCCGTGTCTGTAGGACT
TTTAATCTTTATCTAATTTTCCTGCTATGTTACTTGTTCGGGGTGGATCG
GGTCTCCGGTGGTGGTTCTTGATGAACTGTTTTTTATGTCTGTCTATGAG
CTGCCTTTTTAAATAAGATAGGGCTTGCCTT
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