FC931999

Overview
NameFC931999
Unique NameFC931999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931999_ssr146 microsatellite FC931999_ssr146:146..175. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9778 contig Ccv1_Contig9778:9..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC931999 vs. ExPASy Swiss-Prot
Match: NO93_SOYBN (Early nodulin-93 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.268e-18
Identity = 48/92 (52.17%), Postives = 59/92 (64.13%), Query Frame = 1 
Query:  229 NSPLIASPAEDLKAKAT--NDCVQEGVRAGLKAAAVMCVVTAVPTLVAVRKIPWAKANLNYTGQALIISAVSIASYFITVDKTILECARRNA 498
            NSPL       L  K      C  EGV AG KAA V  V +A+PTL +VR +PWA+ANLN+T QALIIS  + A+YFI  DKT+L  AR+N+
Sbjct:    5 NSPLERPSLASLDQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARANLNHTAQALIISTATAAAYFIVADKTVLATARKNS 96
The following BLAST results are available for this feature:
BLAST of FC931999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NO93_SOYBN6.268e-1852.17Early nodulin-93 OS=Glycine max PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC34203E08EF PostHarveN Citrus clementina cDNA clone C34203E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931999 ID=FC931999; Name=FC931999; organism=Citrus clementina; type=EST; length=653bp
GATAGCGCACACAGATTTGACTGTCATCAAACTATTCAAGATTCAAAAGC
ACATAAAAAGAGATCAAAATCGAAACGAACACTGCAATGCACTGTCCTCC
TCAAATCTTAATCCGCCATCCATTTTTGAGTTTCTTATTCTAATTAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGGAATGGGATTTCCGTCGGAAGTTAG
AGATATTTTCGCATCCAGAAGGTCAAATAACTCGCCACTGATTGCCTCTC
CTGCTGAAGATCTAAAGGCTAAGGCCACCAACGACTGCGTTCAAGAAGGC
GTTCGAGCTGGATTAAAGGCCGCTGCCGTAATGTGTGTTGTCACCGCTGT
GCCGACGTTGGTTGCAGTTCGAAAAATTCCTTGGGCAAAGGCAAACCTGA
ATTATACTGGTCAGGCACTCATCATATCCGCAGTGTCAATTGCTTCTTAC
TTCATCACTGTTGACAAGACTATTTTGGAGTGTGCAAGGAGGAATGCCCA
GTATGGCAAACCAACTTGAGATTCTGTACCTGAAGCAATTCACCATGAAG
ATGCCATGATATGCGTAGTGAGCATAGCACACAGGTTCATATGAGAATAT
TTAAATGTATTTGAGACAATTTTTTTCCCCNACTTGAGCACCGATGGAAT
TCT
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