FC932000

Overview
NameFC932000
Unique NameFC932000
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length786
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932000 vs. ExPASy Swiss-Prot
Match: ASF1B_ARATH (Histone chaperone ASF1B OS=Arabidopsis thaliana GN=ASF1B PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.803e-54
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:  394 EDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDD 645
            +DLEWKLIYVGSAEDETYDQ+LESVLVGPVNVGNYRFVLQAD PDP KIREEDIIGVTVLLLTCSY+ QEF+RVGYYVNNDYDD
Sbjct:   36 DDLEWKLIYVGSAEDETYDQVLESVLVGPVNVGNYRFVLQADSPDPLKIREEDIIGVTVLLLTCSYMDQEFIRVGYYVNNDYDD 119

HSP 2 Score: 68.9366 bits (167), Expect = 4.803e-54
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 2 
Query:  194 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKD 301
            MS++NITNVTVLDNPA F+NPFQFEISYECLT LKD
Sbjct:    1 MSSINITNVTVLDNPAPFVNPFQFEISYECLTSLKD 36
[Close]
BLAST of FC932000 vs. ExPASy Swiss-Prot
Match: ASF1A_ARATH (Probable histone chaperone ASF1A OS=Arabidopsis thaliana GN=ASF1A PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 2.566e-52
Identity = 78/84 (92.86%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:  394 EDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDD 645
            +DLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFV QADPPDPSKI+EEDIIGVTVLLLTCSY+GQEF+RVGYYVNNDY+D
Sbjct:   36 DDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVFQADPPDPSKIQEEDIIGVTVLLLTCSYMGQEFLRVGYYVNNDYED 119

HSP 2 Score: 59.3066 bits (142), Expect = 2.566e-52
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 2 
Query:  194 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKD 301
            MSA+ ITNV VL NPA F++PFQFEISYECL  LKD
Sbjct:    1 MSAIKITNVAVLHNPAPFVSPFQFEISYECLNSLKD 36
[Close]
BLAST of FC932000 vs. ExPASy Swiss-Prot
Match: ASF1_DROME (Histone chaperone asf1 OS=Drosophila melanogaster GN=asf1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 8.854e-40
Identity = 60/84 (71.43%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:  394 EDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDD 645
            EDLEWK+IYVGSAE E +DQ+L+++ VGPV  G + FV QADPPD SKI E D +GVT++LLTCSY GQEFVRVGYYVNNDY D
Sbjct:   36 EDLEWKMIYVGSAESEEHDQVLDTIYVGPVPEGRHIFVFQADPPDVSKIPEPDAVGVTIVLLTCSYRGQEFVRVGYYVNNDYAD 119

HSP 2 Score: 54.6842 bits (130), Expect = 8.854e-40
Identity = 22/36 (61.11%), Postives = 31/36 (86.11%), Query Frame = 2 
Query:  194 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKD 301
            M+ V+ITNV VLDNP++F NPFQFE+++EC+  LK+
Sbjct:    1 MAKVHITNVVVLDNPSSFFNPFQFELTFECIEELKE 36
[Close]
BLAST of FC932000 vs. ExPASy Swiss-Prot
Match: ASF1_CHICK (Histone chaperone ASF1 OS=Gallus gallus GN=ASF1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.604e-37
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  394 EDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDD 645
            EDLEWK+IYVGSAE E YDQ+L+SVLVGPV  G + FV QAD P+P  I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y +
Sbjct:   36 EDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTE 119

HSP 2 Score: 49.6766 bits (117), Expect = 6.604e-37
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 2 
Query:  194 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKD 301
            M+ V + NV VLDNP+ F NPFQFEI++EC+  L +
Sbjct:    1 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSE 36
[Close]
BLAST of FC932000 vs. ExPASy Swiss-Prot
Match: ASF1A_HUMAN (Histone chaperone ASF1A OS=Homo sapiens GN=ASF1A PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.604e-37
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  394 EDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDD 645
            EDLEWK+IYVGSAE E YDQ+L+SVLVGPV  G + FV QAD P+P  I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y +
Sbjct:   36 EDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTE 119

HSP 2 Score: 49.6766 bits (117), Expect = 6.604e-37
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 2 
Query:  194 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKD 301
            M+ V + NV VLDNP+ F NPFQFEI++EC+  L +
Sbjct:    1 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSE 36
[Close]
BLAST of FC932000 vs. ExPASy Swiss-Prot
Match: ASF1A_BOVIN (Histone chaperone ASF1A OS=Bos taurus GN=ASF1A PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.604e-37
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  394 EDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDD 645
            EDLEWK+IYVGSAE E YDQ+L+SVLVGPV  G + FV QAD P+P  I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y +
Sbjct:   36 EDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTE 119

HSP 2 Score: 49.6766 bits (117), Expect = 6.604e-37
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 2 
Query:  194 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKD 301
            M+ V + NV VLDNP+ F NPFQFEI++EC+  L +
Sbjct:    1 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSE 36
[Close]
BLAST of FC932000 vs. ExPASy Swiss-Prot
Match: AS1LA_XENLA (Histone chaperone asf1-A OS=Xenopus laevis GN=asf1-A PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.606e-37
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  394 EDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDD 645
            EDLEWK+IYVGSAE E YDQ+L+SVLVGPV  G + FV QAD P+P  I + D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y +
Sbjct:   36 EDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTE 119

HSP 2 Score: 49.6766 bits (117), Expect = 6.606e-37
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 2 
Query:  194 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKD 301
            M+ V + NV VLDNP+ F NPFQFEI++EC+  L +
Sbjct:    1 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSE 36
[Close]
BLAST of FC932000 vs. ExPASy Swiss-Prot
Match: ASF1_XENTR (Histone chaperone asf1 OS=Xenopus tropicalis GN=asf1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.606e-37
Identity = 57/84 (67.86%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:  394 EDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDD 645
            +DLEWK+IYVGSAE E YDQ+L+SVLVGPV  G + FV QAD P+ S I E D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y D
Sbjct:   36 DDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNSSLIPESDAVGVTVVLITCTYRGQEFIRVGYYVNNEYSD 119

HSP 2 Score: 48.521 bits (114), Expect = 8.606e-37
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 2 
Query:  194 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKD 301
            M+ V I N+ VLDNP  F NPFQFEI++EC+  L D
Sbjct:    1 MAKVQILNMVVLDNPCPFHNPFQFEITFECIEDLPD 36
[Close]
BLAST of FC932000 vs. ExPASy Swiss-Prot
Match: AS1LB_XENLA (Histone chaperone asf1-B OS=Xenopus laevis GN=asf1-B PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.478e-36
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:  394 EDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDD 645
            +DLEWK+IYVGSAE E YDQ L+SVLVGPV  G + FV QAD P+ S I E D +GVTV+L+TC+Y GQEF+RVGYYVNN+Y D
Sbjct:   36 DDLEWKIIYVGSAESEEYDQTLDSVLVGPVPAGRHMFVFQADAPNCSLIPESDAVGVTVVLITCTYRGQEFIRVGYYVNNEYSD 119

HSP 2 Score: 48.521 bits (114), Expect = 2.478e-36
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 2 
Query:  194 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKD 301
            M+ V I N+ VLDNP  F NPFQFEI++EC+  L D
Sbjct:    1 MAKVQILNMVVLDNPCPFHNPFQFEITFECIEDLPD 36
[Close]
BLAST of FC932000 vs. ExPASy Swiss-Prot
Match: AS1LA_DANRE (Histone chaperone asf1-A OS=Danio rerio GN=asf1a PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.479e-36
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:  394 EDLEWKLIYVGSAEDETYDQLLESVLVGPVNVGNYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYIGQEFVRVGYYVNNDYDD 645
            EDLEWK+IYVGSAE E YDQ+L+SVLVGPV  G + FV QAD P+   I E D +GVTV+L+TC+Y GQEF+R+GYYVNN+Y D
Sbjct:   36 EDLEWKIIYVGSAESEEYDQILDSVLVGPVPAGRHMFVFQADAPNTGLIPESDAVGVTVVLITCTYRGQEFIRIGYYVNNEYTD 119

HSP 2 Score: 47.7506 bits (112), Expect = 2.479e-36
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 2 
Query:  194 MSAVNITNVTVLDNPAAFLNPFQFEISYECLTPLKD 301
            M+ V + NV VLDNP+ F NPFQFEI++EC+  L +
Sbjct:    1 MAKVQVLNVAVLDNPSPFGNPFQFEITFECMEDLPE 36
The following BLAST results are available for this feature:
BLAST of FC932000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ASF1B_ARATH4.803e-5491.67Histone chaperone ASF1B OS=Arabidopsis thaliana GN... [more]
ASF1A_ARATH2.566e-5292.86Probable histone chaperone ASF1A OS=Arabidopsis th... [more]
ASF1_DROME8.854e-4071.43Histone chaperone asf1 OS=Drosophila melanogaster ... [more]
ASF1_CHICK6.604e-3766.67Histone chaperone ASF1 OS=Gallus gallus GN=ASF1 PE... [more]
ASF1A_HUMAN6.604e-3766.67Histone chaperone ASF1A OS=Homo sapiens GN=ASF1A P... [more]
ASF1A_BOVIN6.604e-3766.67Histone chaperone ASF1A OS=Bos taurus GN=ASF1A PE=... [more]
AS1LA_XENLA6.606e-3766.67Histone chaperone asf1-A OS=Xenopus laevis GN=asf1... [more]
ASF1_XENTR8.606e-3767.86Histone chaperone asf1 OS=Xenopus tropicalis GN=as... [more]
AS1LB_XENLA2.478e-3667.86Histone chaperone asf1-B OS=Xenopus laevis GN=asf1... [more]
AS1LA_DANRE2.479e-3666.67Histone chaperone asf1-A OS=Danio rerio GN=asf1a P... [more]

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Properties
Property NameValue
Genbank descriptionC34203E10EF PostHarveN Citrus clementina cDNA clone C34203E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932000 ID=FC932000; Name=FC932000; organism=Citrus clementina; type=EST; length=786bp
GGAACACTTCCTCGACAATCAACCGTCCTTTGCACCGCCATTTCCCAGTC
ACCGTTTCTCCTCCTCGAAGACTCTATTCCGCCTTTCGCCTCTAGCCTCT
AGGGTTTCTGATTTCTTCGATGAAGGATATCGAATCCAGGAATAGAGCCA
ATCAATCCACGGAATCATCAGAATCCTGTTCTAACTCAAGACTATGAGCG
CCGTAAATATCACAAACGTCACCGTTTTAGATAACCCTGCTGCGTTTCTC
AATCCGTTTCAGTTCGAAATCTCGTACGAGTGTTTGACCCCTCTTAAAGA
CGCTGCTAATGAGATGTTTGGAGAGGATGGACTGGCAGCAAATCCCTGTC
CAATTCAGAAAATTATTATTGAGATAAAAGGATCAGAACCATTGAGGACT
TGGAATGGAAACTCATTTATGTGGGATCTGCTGAGGATGAGACTTATGAT
CAACTGCTAGAAAGTGTGCTTGTTGGTCCTGTTAATGTTGGTAACTACCG
TTTTGTCTTACAGGCAGACCCTCCGGACCCATCAAAAATCCGTGAAGAGG
ATATAATTGGTGTCACTGTACTGCTTTTAACATGTTCTTATATAGGACAG
GAATTTGTTCGAGTGGGGTATTACGTGAACAATGATTATGATGACGAGCA
GCTAAGAGAGGAGCCTCCTCCAAGGTTTTGATAGATAGAGTTTCAAGAAC
ATATTAGCTGACAAGCTAGAGTCACAAGTTCCCAATCATTTCATCCTGAG
ACATGAGCATGAGAGGACAGTCACTGATCAGCTCTG
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