FC932001

Overview
NameFC932001
Unique NameFC932001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15428 contig Ccv1_Contig15428:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932001 vs. ExPASy Swiss-Prot
Match: OSB4_ARATH (Protein OSB4, chloroplastic OS=Arabidopsis thaliana GN=OSB4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 38/146 (26.03%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  192 ALSPSQNPLTKQAWFISHRQPLKLRLRCSVDYK------DHQYSSQASYPKPAEIPWNKELTNTVHLIGVVGTPIETKHLPSGKVLAWTRLAVRKSATQTS--------WINLTFWDELAHVASQHVEKGQQIYISGRLVSDVVES 587
            ++ PS N   +++W +S +Q L      S          +    S   +P+P E+P+  ++ N++ LIG V  P++      GK  A T ++   S+   S        WI + F  +LAH A+ +++K  +++I+G+++ DV++S
Sbjct:   11 SIRPSLNSTARKSWVLSSQQFLSTSSTESSSRTRGGGGGNRAEKSSEEWPRPMEVPYQPKIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSSNFWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQS 156          
The following BLAST results are available for this feature:
BLAST of FC932001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
OSB4_ARATH8.376e-1126.03Protein OSB4, chloroplastic OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC34203E11EF PostHarveN Citrus clementina cDNA clone C34203E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932001 ID=FC932001; Name=FC932001; organism=Citrus clementina; type=EST; length=699bp
GACAGCTTCGGGCGGGGATACCTTACATGTGCAGTGGAAAACGTGGAGAA
GAGAGATCAGAGAGAGTTCATAGATAGAGAGACGGAGACAGCGAGAGAAG
AATGGCGTTAGAGCAAACGCTCGTATCAACGAGAAACCTCGTCTTTTCGG
TTTCGGTTCGAAGAAAATCTCCAAATAACATTCAAATTCCCGCTCTGTCC
CCATCCCAAAATCCTCTAACTAAGCAAGCTTGGTTTATTAGTCACCGGCA
GCCCTTGAAATTGAGATTGAGATGCTCAGTTGATTACAAAGACCATCAGT
ACAGTAGTCAAGCGTCTTACCCAAAGCCGGCAGAGATTCCGTGGAACAAG
GAACTCACTAACACCGTACACCTCATTGGCGTCGTTGGGACCCCCATTGA
AACAAAGCACCTCCCCTCCGGTAAAGTTCTCGCCTGGACCCGTCTCGCCG
TCAGAAAATCTGCCACACAAACTAGCTGGATTAATTTGACCTTCTGGGAT
GAGCTGGCACATGTTGCATCTCAGCATGTAGAGAAAGGCCAACAAATATA
TATCTCTGGCCGGCTGGTTTCAGATGTGGTTGAAAGTGATGATGGACAAC
AGCAGACATACTATAAGGTAGTTGTTCAGCAACTGAATTTTGTTGAGAGG
AGCTCATCATCAATGTCCTCTTATGATAGTGAATCTAACTTTATGACTG
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