FC932002

Overview
NameFC932002
Unique NameFC932002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: AB13I_ARATH (Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.606e-76
Identity = 107/133 (80.45%), Postives = 121/133 (90.98%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQFASGSLEG 595
            ++GVE+RLPSELSGGMKKRVALARS+IFD TKE +EPEVLLYDEPTAGLDPIASTVVEDLIRSVH   E+ +  PG IASY+VVTHQHSTI+RAVDRL+FLYEGKIVWQGMTHEFT+S+NP   QFA+GSL+G
Sbjct:  209 LKGVENRLPSELSGGMKKRVALARSLIFDTTKEVIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHMTDEDAVGKPGKIASYLVVTHQHSTIQRAVDRLLFLYEGKIVWQGMTHEFTTSTNPIVQQFATGSLDG 341          

HSP 2 Score: 84.7297 bits (208), Expect = 4.606e-76
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 3
Query:   15 ESSVLRIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            E S LRIGLVFQSAALFDSL+VRENVGFLLYE SKM + QISELV + LAAVGLK
Sbjct:  156 EISGLRIGLVFQSAALFDSLSVRENVGFLLYERSKMSENQISELVTQTLAAVGLK 210          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: MKL_MYCTU (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium tuberculosis GN=mkl PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.702e-19
Identity = 39/127 (30.71%), Postives = 65/127 (51.18%), Query Frame = 2
Query:  203 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQFASG 583
            G E + P E+SGGM+KR  LAR+++ D       P+++L DEP +GLDP+ +  +  LI  ++ + +         A+ ++VTH  +  R   D +  L+   +V  G      +S  P   QF +G
Sbjct:  155 GDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPVRTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGMLFRKHLVMFGPREVLLTSDEPVVRQFLNG 265          

HSP 2 Score: 44.2838 bits (103), Expect = 3.702e-19
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3
Query:   36 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            G++FQ  ALF S+ + +N  F L E++K ++ +I ++V E LA VGL
Sbjct:  107 GVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIVMEKLALVGL 153          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: MKL_MYCBO (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium bovis GN=mkl PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.702e-19
Identity = 39/127 (30.71%), Postives = 65/127 (51.18%), Query Frame = 2
Query:  203 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQFASG 583
            G E + P E+SGGM+KR  LAR+++ D       P+++L DEP +GLDP+ +  +  LI  ++ + +         A+ ++VTH  +  R   D +  L+   +V  G      +S  P   QF +G
Sbjct:  155 GDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPVRTAYLSQLIMDINAQID---------ATILIVTHNINIARTVPDNMGMLFRKHLVMFGPREVLLTSDEPVVRQFLNG 265          

HSP 2 Score: 44.2838 bits (103), Expect = 3.702e-19
Identity = 20/47 (42.55%), Postives = 32/47 (68.09%), Query Frame = 3
Query:   36 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            G++FQ  ALF S+ + +N  F L E++K ++ +I ++V E LA VGL
Sbjct:  107 GVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIVMEKLALVGL 153          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: MKL_MYCLE (Probable ribonucleotide transport ATP-binding protein mkl OS=Mycobacterium leprae GN=mkl PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.378e-18
Identity = 39/127 (30.71%), Postives = 65/127 (51.18%), Query Frame = 2
Query:  203 GVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQFASG 583
            G E + P E+SGGM+KR  LAR+++ D       P+++L DEP +GLDP+ +  +  LI  ++ + +         A+ ++VTH  +  R   D +  L+   +V  G      +S  P   QF +G
Sbjct:  143 GDEKKFPGEISGGMRKRAGLARALVLD-------PQIILCDEPDSGLDPVRTAYLSQLIMDINAQID---------ATILIVTHNVNIARTVPDNMGMLFRKHLVMFGPREVLLTSDEPVVRQFLNG 253          

HSP 2 Score: 42.3578 bits (98), Expect = 1.378e-18
Identity = 19/47 (40.43%), Postives = 31/47 (65.96%), Query Frame = 3
Query:   36 GLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            G++FQ  ALF S+ + +N  F L E++K ++ +I ++V E L  VGL
Sbjct:   95 GVLFQDGALFGSMNLYDNTAFPLREHTKKKESEIRDIVMEKLQLVGL 141          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: Y1087_HAEIN (Uncharacterized ABC transporter ATP-binding protein HI1087 OS=Haemophilus influenzae GN=HI1087 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.119e-17
Identity = 40/133 (30.08%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQFASGSLEG 595
            ++G    +PSELSGGM +R ALAR+I  D       P+++++DEP  G DPI+  V+  LI+ +++          N+ S +VV+H    +    D    + + K++ +G + +   S +    QF  G  +G
Sbjct:  131 LRGAAALMPSELSGGMARRAALARAIALD-------PDLIMFDEPFTGQDPISMGVILSLIKRLNE--------ALNLTS-IVVSHDVEEVLSIADYAYIIADQKVIAEGTSEQLLQSQDLRVVQFLKGESDG 247          

HSP 2 Score: 40.817 bits (94), Expect = 7.119e-17
Identity = 19/50 (38.00%), Postives = 33/50 (66.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            R+G++FQS ALF  ++  +NV F + E++ + +  I ++V   L AVGL+
Sbjct:   83 RMGMLFQSGALFTDISTFDNVAFPIREHTHLPENLIRQIVLMKLEAVGLR 132          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: PSTB_MYCGA (Phosphate import ATP-binding protein pstB OS=Mycoplasma gallisepticum GN=pstB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.554e-16
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 2
Query:  230 LSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSL 589
            LSGG ++R+++AR+I       +++PEVLL DEPT+ LDPIA+  +E LI  + K             S V+VTH  +  +R  D  +F YEG+++  G T + FT  +N     +  G +
Sbjct:  223 LSGGQQQRLSIARAI-------ALKPEVLLMDEPTSALDPIATNKIEQLIHQLKKS-----------YSIVIVTHSMAQAQRVSDETVFFYEGRVLEHGTTKQIFTQPNNEKTKDYIDGRI 325          

HSP 2 Score: 30.8018 bits (68), Expect = 1.554e-16
Identity = 16/49 (32.65%), Postives = 28/49 (57.14%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            ++G+VFQ    F SL++ EN+ + L  +      +I ++VKE+L    L
Sbjct:  161 KVGMVFQKPTPF-SLSIYENIAYALKSHGIKDKIKIDQIVKESLEGAAL 208          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_LACJO (Methionine import ATP-binding protein metN OS=Lactobacillus johnsonii GN=metN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.756e-16
Identity = 40/130 (30.77%), Postives = 73/130 (56.15%), Query Frame = 2
Query:  212 DRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHE-FTSSSNPXCSQFASGSLEGQ 598
            D  P++LSGG ++RVA+AR++  D       P++L+ DE T+ LDP  +  + DL+  ++KK   GL       + V++TH+   ++R  ++++ + +GK++ +G   E F         QF  G+L+ Q
Sbjct:  139 DFYPAQLSGGQQQRVAIARALAND-------PDILISDEATSALDPKTTNQILDLLYDLNKK--LGL-------TVVLITHEMDAVKRVANKIVVMEKGKVIEKGELREVFLHPQKQLTRQFVGGALQAQ 252          

HSP 2 Score: 35.4242 bits (80), Expect = 5.756e-16
Identity = 19/50 (38.00%), Postives = 32/50 (64.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            +IG++FQ+  L +  TV ENV F L ++S++ D+++ +     L  VGLK
Sbjct:   87 KIGMIFQNFNLLNEETVIENVAFAL-QHSRLSDQELEKKSLHLLELVGLK 135          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: METN_GEOKA (Methionine import ATP-binding protein metN OS=Geobacillus kaustophilus GN=metN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.487e-16
Identity = 46/133 (34.59%), Postives = 73/133 (54.89%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQG-MTHEFTSSSNPXCSQFASGSLE 592
            + G ED  PS+LSGG K+RV +AR++       +  P+VLL DE T+ LDP  +  + DL+  ++K+   GL       + V++TH+   IR+  DR+  +  G+IV QG + H F +   P   +F    +E
Sbjct:  130 LSGREDAYPSQLSGGQKQRVGIARAL-------ANNPKVLLCDEATSALDPQTTDAILDLLVDINKR--LGL-------TIVLITHEMHVIRKICDRVAVMESGRIVEQGEVLHVFRNPQQPITKRFVKQLIE 246          

HSP 2 Score: 30.8018 bits (68), Expect = 7.487e-16
Identity = 20/48 (41.67%), Postives = 29/48 (60.42%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            IG++FQ   L  S TVREN+ F L E + +  E+ ++ V E +  VGL
Sbjct:   84 IGMIFQHFNLLWSRTVRENIAFPL-EIAGVPKEERNKRVDELIELVGL 130          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: GLUA_COREF (Glutamate transport ATP-binding protein gluA OS=Corynebacterium efficiens GN=gluA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.830e-16
Identity = 40/115 (34.78%), Postives = 67/115 (58.26%), Query Frame = 2
Query:  173 IKDLTEPWIQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIV 517
            +K L    I    ++ P++LSGG ++RVA+AR++       ++ P+++L+DEPT+ LDP     V D++ S+ K+G           + V VTH+    RRA DR++F+ +G IV
Sbjct:  118 MKLLERVGIANQAEKYPAQLSGGQQQRVAIARAL-------AMNPKIMLFDEPTSALDPEMVNEVLDVMASLAKEG----------MTMVCVTHEMGFARRAADRVLFMSDGAIV 215          

HSP 2 Score: 34.2686 bits (77), Expect = 9.830e-16
Identity = 17/48 (35.42%), Postives = 29/48 (60.42%), Query Frame = 3
Query:   33 IGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGL 176
            +G+VFQS  LF  LT+++NV     +  KM+  + +E+  + L  VG+
Sbjct:   79 VGMVFQSFNLFPHLTIKDNVTLGPMKVRKMKKSEANEVAMKLLERVGI 126          
BLAST of FC932002 vs. ExPASy Swiss-Prot
Match: YRBF_ECOLI (Uncharacterized ABC transporter ATP-binding protein yrbF OS=Escherichia coli (strain K12) GN=yrbF PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.273e-15
Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 2
Query:  197 IQGVEDRLPSELSGGMKKRVALARSIIFDNTKESVEPEVLLYDEPTAGLDPIASTVVEDLIRSVHKKGENGLANPGNIASYVVVTHQHSTIRRAVDRLIFLYEGKIVWQGMTHEFTSSSNPXCSQFASGSLEG 595
            ++G    +PSELSGGM +R ALAR+I       ++EP+++++DEP  G DPI   V+  LI  +         N     + VVV+H    +    D    L + KIV  G      ++ +P   QF  G  +G
Sbjct:  134 LRGAAKLMPSELSGGMARRAALARAI-------ALEPDLIMFDEPFVGQDPITMGVLVKLISEL---------NSALGVTCVVVSHDVPEVLSIADHAWILADKKIVAHGSAQALQANPDPRVRQFLDGIADG 250          

HSP 2 Score: 35.8094 bits (81), Expect = 1.273e-15
Identity = 18/50 (36.00%), Postives = 30/50 (60.00%), Query Frame = 3
Query:   30 RIGLVFQSAALFDSLTVRENVGFLLYENSKMRDEQISELVKENLAAVGLK 179
            R+ ++FQS ALF  + V +NV + L E++++    +   V   L AVGL+
Sbjct:   86 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR 135          
The following BLAST results are available for this feature:
BLAST of FC932002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
AB13I_ARATH4.606e-7680.45Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplast... [more]
MKL_MYCTU3.702e-1930.71Probable ribonucleotide transport ATP-binding prot... [more]
MKL_MYCBO3.702e-1930.71Probable ribonucleotide transport ATP-binding prot... [more]
MKL_MYCLE1.378e-1830.71Probable ribonucleotide transport ATP-binding prot... [more]
Y1087_HAEIN7.119e-1730.08Uncharacterized ABC transporter ATP-binding protei... [more]
PSTB_MYCGA1.554e-1635.54Phosphate import ATP-binding protein pstB OS=Mycop... [more]
METN_LACJO5.756e-1630.77Methionine import ATP-binding protein metN OS=Lact... [more]
METN_GEOKA7.487e-1634.59Methionine import ATP-binding protein metN OS=Geob... [more]
GLUA_COREF9.830e-1634.78Glutamate transport ATP-binding protein gluA OS=Co... [more]
YRBF_ECOLI1.273e-1532.33Uncharacterized ABC transporter ATP-binding protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34203F01EF PostHarveN Citrus clementina cDNA clone C34203F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932002 ID=FC932002; Name=FC932002; organism=Citrus clementina; type=EST; length=600bp
TGATGGCATTATGAGAAAGTAGTGTGCTTCGGATTGGATTGGTTTTCCAA
AGTGCGGCTCTTTTTGACTCATTGACTGTCCGGGAAAATGTTGGTTTCCT
TCTGTATGAAAATTCGAAGATGCGTGATGAACAAATTTCAGAGCTTGTGA
AGGAAAATTTGGCTGCTGTTGGATTAAAGATCTGACTGAGCCTTGGATCC
AGGGAGTTGAGGATCGCTTACCATCTGAGTTGTCTGGTGGAATGAAGAAA
AGAGTTGCTTTAGCTCGATCCATAATTTTCGATAACACAAAGGAATCGGT
GGAGCCAGAGGTGCTGTTGTATGATGAACCTACGGCTGGCCTTGATCCCA
TTGCATCCACTGTAGTTGAAGATCTGATCCGTTCCGTTCATAAGAAAGGT
GAAAATGGACTTGCGAACCCTGGTAATATTGCTTCCTACGTGGTTGTTAC
TCACCAACATAGTACCATTAGAAGAGCTGTTGACAGGTTGATATTCCTCT
ACGAGGGTAAGATTGTTTGGCAAGGAATGACCCATGAATTCACATCATCA
TCCAATCCAANTTGTTCACAGTTTGCATCAGGGAGCTTGGAAGGCCAATC
back to top