FC932143

Overview
NameFC932143
Unique NameFC932143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 5.780e-67
Identity = 132/180 (73.33%), Postives = 148/180 (82.22%), Query Frame = 2
Query:  176 DQFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVEE-GDRQPKP------------SEEA--DYSSSANEG-NWR 667
            + FP+GLRVLVVDDDPTCL ILE+MLRTCLYEVTKCNRAE+AL +LR NK+G+DIVISDVHMPDMDGFKLLE VGLEMDLPVIMMSADDSK VV+KGVTHGA DYLIKPVR+EALKNIW+HVVRKR++EW   E SGS+EE G+RQ +              E+A  D SSS NEG NWR
Sbjct:   31 EMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGNNWR 210          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: ARR2_ARATH (Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.682e-66
Identity = 131/170 (77.06%), Postives = 142/170 (83.53%), Query Frame = 2
Query:  176 DQFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQS-GSVE----EGDRQPKPSEEAD-YSSSANEGNWR 667
            D FPA LRVLVVDDDPTCL ILE+ML TCLY VTKCNRAE AL +LR NKNG+DIVISDVHMPDMDGFKLLE VGLEMDLPVIMMSADDSK VV+KGVTHGA DYLIKPVRIEALKNIW+HVVRK++NEW   E S GS+E    + DRQ +  E+AD  SSS NEGN R
Sbjct:   22 DPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGR 191          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: ARR12_ARATH (Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.916e-50
Identity = 100/161 (62.11%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  176 DQFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVEEGDRQPKPSEEADYSSSANEG 658
            DQFP G+RVL VDDD TCL+ILE +LR C Y VT  N+A+ AL++LR NKN +D+VISDV MPDMDGFKLLE VGLEMDLPVIM+SA    + VMKGVTHGACDYL+KPVRIE LKNIW+HVVR R +     +  GS   GD++     E   +S  N G
Sbjct:   11 DQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVRSRFD-----KNRGSNNNGDKRDGSGNEGVGNSDPNNG 166          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: ARR10_ARATH (Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.868e-49
Identity = 98/165 (59.39%), Postives = 120/165 (72.73%), Query Frame = 2
Query:  176 DQFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRK---RKNEWKDLEQSGSVEEGDRQPKPSEEADYSSSANEGN 661
            DQFP G+RVL VDDD TCLRIL+ +L+ C Y VT  N+A+ AL++LR NKN +D+VISDV MPDMDGFKLLE VGLEMDLPVIM+SA    + VMKGV HGACDYL+KPVRIE LKNIW+HVVRK   +KN+      SG+ ++ +R+ K   E +        N
Sbjct:   11 DQFPVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVVRKSKLKKNKSNVSNGSGNCDKANRKRKEQYEEEEEEERGNDN 175          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: ARR11_ARATH (Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.283e-47
Identity = 92/134 (68.66%), Postives = 107/134 (79.85%), Query Frame = 2
Query:  185 PAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSG 586
            P GLRVLVVDDDPT L+ILEKML+ C YEVT C  A  AL +LR  K+GYDIVISDV+MPDMDGFKLLE VGLE+DLPVIMMS D     VMKGV HGACDYL+KP+R++ LK IW+HV+RK+  E +D+E  G
Sbjct:    8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVLRKKLQEVRDIEGCG 141          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: ARR14_ARATH (Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.086e-44
Identity = 86/142 (60.56%), Postives = 112/142 (78.87%), Query Frame = 2
Query:  176 DQFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVG-LEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVEE 598
            DQFP+GLR+LVVDDD +CL ILEKML   +Y+VT C++A++AL +LR  K+ +D+V+SDVHMP M+G+ LL+QVG LEMDLPVIMMS D     VM G+ HGACDYLIKP+R E LKNIW+HVVR++    K+L  S ++E+
Sbjct:    5 DQFPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVVRRKCVMKKELRSSQALED 146          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: ARR18_ARATH (Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 8.404e-42
Identity = 91/177 (51.41%), Postives = 113/177 (63.84%), Query Frame = 2
Query:  176 DQFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDL---EQSGSV------------EEGDRQPKPSEEADYSSSANEGN 661
            D+FP G+RVL VDD+PTCLR LE++L  C Y VTK   +  AL+MLR N N +D+VISDV MPD DGFKLLE +GLEMDLPVIM+SA      VMKG+ HGACDYL+KPV ++ L+NIW HVV+K    +  L    +S SV            + GD      EE D   S  +G+
Sbjct:   12 DKFPVGMRVLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALEMLRENSNMFDLVISDVEMPDTDGFKLLE-IGLEMDLPVIMLSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWHHVVKKNIKSYAKLLPPSESDSVPSASRKRKDKVNDSGDEDDSDREEDDGEGSEQDGD 187          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: APRR4_ARATH (Putative two-component response regulator-like APRR4 OS=Arabidopsis thaliana GN=APRR4 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.790e-26
Identity = 65/162 (40.12%), Postives = 100/162 (61.73%), Query Frame = 2
Query:  182 FPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVEEGDRQPKPSEEADYSSSANEGNWR 667
            FP GLRVLV D+DP+ L ILE+ L+   Y+VT CN    A+  LR ++N +D+ +  V+  + D F+ L ++G EMDLP+I++S DDS + V K + +GA DYLIKP+R E L+ +++H+V+K       + +  SV  G+ +    E+   SSS  +   R
Sbjct:   38 FPEGLRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLVKK-------MRERRSVVTGEAEKAAGEK---SSSVGDSTIR 189          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: EHD1_ORYSJ (Two-component response regulator EHD1 OS=Oryza sativa subsp. japonica GN=EHD1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 56/144 (38.89%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  182 FPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVEEGDRQP 613
            +P GLRVLV+DDD + L ++E +L  C Y+VT       A+  +  N    D+VISD   P  DG  +L++V  +  +P ++M++      VMK V +GA D+L+KPVRIE L NIW+H+ RK+  + K+    G++E+    P
Sbjct:    7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHPP 150          
BLAST of FC932143 vs. ExPASy Swiss-Prot
Match: EHD1_ORYSI (Two-component response regulator EHD1 OS=Oryza sativa subsp. indica PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 56/144 (38.89%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  182 FPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWRHVVRKRKNEWKDLEQSGSVEEGDRQP 613
            +P GLRVLV+DDD + L ++E +L  C Y+VT       A+  +  N    D+VISD   P  DG  +L++V  +  +P ++M++      VMK V +GA D+L+KPVRIE L NIW+H+ RK+  + K+    G++E+    P
Sbjct:    7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHPP 150          
The following BLAST results are available for this feature:
BLAST of FC932143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ARR1_ARATH5.780e-6773.33Two-component response regulator ARR1 OS=Arabidops... [more]
ARR2_ARATH1.682e-6677.06Two-component response regulator ARR2 OS=Arabidops... [more]
ARR12_ARATH4.916e-5062.11Two-component response regulator ARR12 OS=Arabidop... [more]
ARR10_ARATH1.868e-4959.39Two-component response regulator ARR10 OS=Arabidop... [more]
ARR11_ARATH2.283e-4768.66Two-component response regulator ARR11 OS=Arabidop... [more]
ARR14_ARATH3.086e-4460.56Two-component response regulator ARR14 OS=Arabidop... [more]
ARR18_ARATH8.404e-4251.41Two-component response regulator ARR18 OS=Arabidop... [more]
APRR4_ARATH3.790e-2640.12Putative two-component response regulator-like APR... [more]
EHD1_ORYSJ5.473e-2538.89Two-component response regulator EHD1 OS=Oryza sat... [more]
EHD1_ORYSI5.473e-2538.89Two-component response regulator EHD1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC34205B02EF PostHarveN Citrus clementina cDNA clone C34205B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932143 ID=FC932143; Name=FC932143; organism=Citrus clementina; type=EST; length=668bp
GAAAGCCATGTCTTCTTCAACTTCAATCCCTTAAAAAAATATTTTTTTCT
TCTTAATATGTAACTCAAATCTCTCTTCTATCTCTCTAATTCTTTGCGTA
TCTCATCTGGGTTCTTTGAATTTCGAACTGGAAAAAGGATCCATGTCACC
CGCTAGTTCAAGTGTTGCTGTTTCCGATCAGTTCCCGGCTGGCTTACGTG
TCCTTGTTGTTGATGATGATCCTACTTGTCTTAGGATCTTGGAAAAGATG
CTTAGGACATGTCTTTATGAAGTTACAAAATGCAATCGAGCAGAGATTGC
TTTGGATATGCTTCGAACGAACAAGAATGGGTACGATATTGTTATCAGTG
ATGTTCATATGCCAGATATGGATGGATTCAAACTCCTTGAGCAGGTCGGG
CTGGAGATGGACCTGCCGGTTATCATGATGTCTGCGGATGATAGCAAACA
AGTTGTCATGAAAGGTGTTACTCACGGTGCTTGTGATTATTTAATTAAGC
CAGTTCGAATTGAGGCACTGAAGAACATATGGCGGCATGTGGTTCGGAAG
AGGAAGAACGAGTGGAAGGACTTGGAGCAGTCAGGAAGTGTGGAAGAGGG
AGATCGGCAACCAAAACCATCTGAAGAAGCGGATTATTCTTCCTCAGCAA
ATGAAGGAAATTGGAGAA
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