FC932149

Overview
NameFC932149
Unique NameFC932149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN2_MOUSE (GPN-loop GTPase 2 OS=Mus musculus GN=Gpn2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.895e-51
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 3
Query:  105 KVAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVEL 344
            +VAV+NLDPAND LPYECAV++ +LV L DVM    LGPNGGL+YCM+YLE N+DWL++K EP L+ HY LFD PGQVEL
Sbjct:   39 RVAVVNLDPANDGLPYECAVDVGELVGLGDVMDALRLGPNGGLLYCMEYLEANLDWLRAKLEP-LRGHYFLFDCPGQVEL 117          

HSP 2 Score: 106.301 bits (264), Expect = 1.895e-51
Identity = 53/107 (49.53%), Postives = 67/107 (62.62%), Query Frame = 1
Query:  355 HSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSAKYRKLTRSCV 675
            H  A   I   + + +LRLTAVHLVD+H C+DP K++               PHVN+LSK+DLIE+YGKLAFNL+YYT+V DLSYL   L  DP   +YR+L    V
Sbjct:  120 HHTALRSIFSQMAQWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHVNLLSKMDLIEHYGKLAFNLDYYTEVLDLSYLLEHLASDPFFRRYRQLNEKLV 226          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN2_BOVIN (GPN-loop GTPase 2 OS=Bos taurus GN=GPN2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.470e-51
Identity = 55/80 (68.75%), Postives = 68/80 (85.00%), Query Frame = 3
Query:  105 KVAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVEL 344
            +VAV+NLDPAN+ LPYECAV++ +LV LSDVM E  LGPNGGL+YCM+YLE N+DWL++K +P L+ HY LFD PGQVEL
Sbjct:   39 RVAVVNLDPANEGLPYECAVDVGELVGLSDVMDELQLGPNGGLLYCMEYLEANLDWLRAKLDP-LRGHYFLFDCPGQVEL 117          

HSP 2 Score: 104.76 bits (260), Expect = 2.470e-51
Identity = 53/107 (49.53%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  355 HSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSAKYRKLTRSCV 675
            H  A   I   + + +LRLTAVHLVD+H C+DP K++               PHVN+LSK+DLIE+YGKLAFNL+YYT+V DLSYL   L  DP    YR+L    V
Sbjct:  120 HHGALRSIFSQMTQWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHVNLLSKMDLIEHYGKLAFNLDYYTEVLDLSYLLDHLASDPFFRHYRQLNEKLV 226          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN2_MACFA (GPN-loop GTPase 2 OS=Macaca fascicularis GN=GPN2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.560e-50
Identity = 53/80 (66.25%), Postives = 66/80 (82.50%), Query Frame = 3
Query:  105 KVAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVEL 344
            +VAV+NLDPAN+ LPYECAV++ +LV L DVM    LGPNGGL+YCM+YLE N+DWL++K +P L+ HY LFD PGQVEL
Sbjct:   39 RVAVVNLDPANEGLPYECAVDVGELVGLGDVMDALRLGPNGGLLYCMEYLEANLDWLRAKLDP-LRGHYFLFDCPGQVEL 117          

HSP 2 Score: 104.375 bits (259), Expect = 4.560e-50
Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  355 HSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSAKYRKLTRSCV 675
            H  A   I   + + +LRLTAVHLVD+H C+DP K++               PH+N+LSK+DLIE+YGKLAFNL+YYT+V DLSYL   L  DP    YR+L    V
Sbjct:  120 HHGALRSIFSQMAQWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHINLLSKMDLIEHYGKLAFNLDYYTEVLDLSYLLDHLASDPFFRHYRQLNEKLV 226          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN2_HUMAN (GPN-loop GTPase 2 OS=Homo sapiens GN=GPN2 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.560e-50
Identity = 53/80 (66.25%), Postives = 66/80 (82.50%), Query Frame = 3
Query:  105 KVAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVEL 344
            +VAV+NLDPAN+ LPYECAV++ +LV L DVM    LGPNGGL+YCM+YLE N+DWL++K +P L+ HY LFD PGQVEL
Sbjct:   39 RVAVVNLDPANEGLPYECAVDVGELVGLGDVMDALRLGPNGGLLYCMEYLEANLDWLRAKLDP-LRGHYFLFDCPGQVEL 117          

HSP 2 Score: 104.375 bits (259), Expect = 4.560e-50
Identity = 52/107 (48.60%), Postives = 66/107 (61.68%), Query Frame = 1
Query:  355 HSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSAKYRKLTRSCV 675
            H  A   I   + + +LRLTAVHLVD+H C+DP K++               PH+N+LSK+DLIE+YGKLAFNL+YYT+V DLSYL   L  DP    YR+L    V
Sbjct:  120 HHGALRSIFSQMAQWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHINLLSKMDLIEHYGKLAFNLDYYTEVLDLSYLLDHLASDPFFRHYRQLNEKLV 226          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN2_DANRE (GPN-loop GTPase 2 OS=Danio rerio GN=gpn2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.906e-47
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 3
Query:  105 KVAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            KV ++NLDPAN+ LPY CAV+I +LV L DVM    LGPNGGL+Y M+YLE N+DWL++K + L  D Y LFD PGQVEL+
Sbjct:   40 KVVIVNLDPANEGLPYPCAVDIAELVTLDDVMDGLKLGPNGGLIYSMEYLEANLDWLENKLK-LHHDCYFLFDCPGQVELY 119          

HSP 2 Score: 103.99 bits (258), Expect = 9.906e-47
Identity = 51/94 (54.26%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  355 HSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDP 636
            H++ KN+  +L  K N RLTAVHLVD+H C+DP K++               PHVNVLSK+DLIE YGKLAFNL++YT+V DLSYL   L  DP
Sbjct:  122 HNSVKNIFAQL-SKWNFRLTAVHLVDSHYCADPAKFISVLCTSLSTMLHVELPHVNVLSKMDLIEQYGKLAFNLDFYTEVLDLSYLVEHLSADP 214          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN2_DICDI (GPN-loop GTPase 2 homolog OS=Dictyostelium discoideum GN=gpn2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.263e-43
Identity = 50/81 (61.73%), Postives = 68/81 (83.95%), Query Frame = 3
Query:  105 KVAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            KV++INLDP+N+++PYE AVNI++L+    V+ E  LGPNGGL++CM+YLEKN+DWL+ K  P LKDHY++FD PGQVEL+
Sbjct:   32 KVSIINLDPSNENIPYEPAVNIQELIDFQTVVNETDLGPNGGLIFCMEYLEKNLDWLKEKLLP-LKDHYIIFDCPGQVELY 111          

HSP 2 Score: 83.9593 bits (206), Expect = 1.263e-43
Identity = 42/107 (39.25%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  349 FLHSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSAKYRKLTRS 669
            + H    + I+  I K + RLT + + D+  C +P  ++               PH+NVLSK+DLIE  G L FNL++YTDV DL YL   L +DPR  KY KL ++
Sbjct:  111 YTHYKIISNILDNIMKWSFRLTVIQVFDSFYCKNPSNFISILLVSLSGMVRIELPHINVLSKMDLIEQNGPLDFNLDFYTDVLDLKYLDAFLDKDPRLKKYSKLNKA 217          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN2_XENLA (GPN-loop GTPase 2 OS=Xenopus laevis GN=gpn2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.735e-39
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  349 FLHSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSAKYRKL 660
            + H  A   I+R +    LRL AVHLVD+H C+DP K++               PH+NVLSK+DLIE YG+LAFNL+YYT+V DLS+L   L  DP   ++++L
Sbjct:  127 YTHHPALPDILRRLGGWGLRLCAVHLVDSHYCTDPAKFISVLCTSLSTMLHVELPHINVLSKMDLIEQYGRLAFNLDYYTEVMDLSFLVEQLTSDPFFRRHKRL 230          

HSP 2 Score: 85.5001 bits (210), Expect = 1.735e-39
Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 3
Query:  105 KVAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            K A+INLDPA +  P   AV++ +L+ L +VM E  LGPNG L+YCM+YL++N+DWL+++ +  L+  YLL D PGQVEL+
Sbjct:   49 KSAIINLDPAGEDEP-GAAVSLRELLGLEEVMSELRLGPNGSLLYCMEYLQENLDWLRARLQG-LRGTYLLLDCPGQVELY 127          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN2_XENTR (GPN-loop GTPase 2 OS=Xenopus tropicalis GN=gpn2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.262e-39
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  349 FLHSNAKNVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIENYGKLAFNLEYYTDVQDLSYLQHALGQDPRSAKYRKL 660
            + H  A   ++R +    LRL AVHLVD+H C+DP K++               PH+NVLSK+DLIE YG+LAFNL+YYT+V DLSYL   L  DP   ++++L
Sbjct:  127 YTHHPALPDVLRRLGAWGLRLCAVHLVDSHYCTDPAKFISVLCTSLSTMLHVELPHINVLSKMDLIEQYGRLAFNLDYYTEVMDLSYLVEQLTSDPFFRRHKRL 230          

HSP 2 Score: 83.5741 bits (205), Expect = 2.262e-39
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 3
Query:  105 KVAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            K A+INLDPA +  P   AV++ +L+ L +VM E  LGPNG L+YCM+YL++N+DWL+ + +  L+  Y L D PGQVEL+
Sbjct:   49 KSAIINLDPAGEDEP-GAAVSLRELLGLEEVMSELRLGPNGALLYCMEYLQENLDWLRGRLQG-LRGTYFLLDCPGQVELY 127          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN3_YEAST (GPN-loop GTPase 3 homolog YLR243W OS=Saccharomyces cerevisiae GN=YLR243W PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.057e-24
Identity = 45/105 (42.86%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   33 PSGFQAASSLMAKKLIWALPFK*MKVAVINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            P+G  A  S     +I  +     +  ++NLDPA ++  YE  ++I DL+ L DVM E  LGPNG L+YC +YL KN+DWL  +      D YL+FD PGQ+EL+
Sbjct:   11 PAG--AGKSTFCNSIISHMQTVGRRAHIVNLDPAAEATKYEFTIDIRDLISLDDVMEEMDLGPNGALIYCFEYLLKNLDWLDEEIGD-FNDEYLIFDCPGQIELY 112          

HSP 2 Score: 41.5874 bits (96), Expect = 4.057e-24
Identity = 20/60 (33.33%), Postives = 31/60 (51.67%), Query Frame = 1
Query:  370 NVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLIE 549
            N++  L ++LN  L A +L++A    D  K+                PH+NVLSK+DLI+
Sbjct:  120 NIVRHLTQQLNFNLCATYLLEAPFVIDSSKFFSGALSAMSAMILLELPHINVLSKLDLIK 179          
BLAST of FC932149 vs. ExPASy Swiss-Prot
Match: GPN3_CANGA (GPN-loop GTPase 3 homolog CAGL0G08294g OS=Candida glabrata GN=CAGL0G08294g PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.515e-23
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  114 VINLDPANDSLPYECAVNIEDLVKLSDVMMEHALGPNGGLVYCMDYLEKNIDWLQSKSEPLLKDHYLLFDFPGQVELF 347
            ++NLDPA +   YE  ++I DL+ L DVM E  LGPNG L+YC +YL KN+DWL  +      D YL+FD PGQ+EL+
Sbjct:   36 IVNLDPAAEPSKYEFTIDIRDLISLDDVMEELDLGPNGALIYCFEYLMKNLDWLDEEIGD-YNDEYLIFDCPGQIELY 112          

HSP 2 Score: 41.5874 bits (96), Expect = 1.515e-23
Identity = 22/65 (33.85%), Postives = 33/65 (50.77%), Query Frame = 1
Query:  370 NVIMRLIKKLNLRLTAVHLVDAHLCSDPGKYVXXXXXXXXXXXXXXXPHVNVLSKIDLI-ENYGK 561
            N++  L  +LN  L A +L++A    D  K+                PH+NVLSK+D+I + YGK
Sbjct:  120 NIVRHLQGQLNFNLCATYLLEAPFVIDSSKFFSGALSAMSAMILLELPHINVLSKLDMIKDEYGK 184          
The following BLAST results are available for this feature:
BLAST of FC932149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GPN2_MOUSE1.895e-5168.75GPN-loop GTPase 2 OS=Mus musculus GN=Gpn2 PE=2 SV=... [more]
GPN2_BOVIN2.470e-5168.75GPN-loop GTPase 2 OS=Bos taurus GN=GPN2 PE=2 SV=1[more]
GPN2_MACFA4.560e-5066.25GPN-loop GTPase 2 OS=Macaca fascicularis GN=GPN2 P... [more]
GPN2_HUMAN4.560e-5066.25GPN-loop GTPase 2 OS=Homo sapiens GN=GPN2 PE=2 SV=... [more]
GPN2_DANRE9.906e-4761.73GPN-loop GTPase 2 OS=Danio rerio GN=gpn2 PE=2 SV=1[more]
GPN2_DICDI1.263e-4361.73GPN-loop GTPase 2 homolog OS=Dictyostelium discoid... [more]
GPN2_XENLA1.735e-3946.15GPN-loop GTPase 2 OS=Xenopus laevis GN=gpn2 PE=2 S... [more]
GPN2_XENTR2.262e-3946.15GPN-loop GTPase 2 OS=Xenopus tropicalis GN=gpn2 PE... [more]
GPN3_YEAST4.057e-2442.86GPN-loop GTPase 3 homolog YLR243W OS=Saccharomyces... [more]
GPN3_CANGA1.515e-2351.28GPN-loop GTPase 3 homolog CAGL0G08294g OS=Candida ... [more]

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Properties
Property NameValue
Genbank descriptionC34205B08EF PostHarveN Citrus clementina cDNA clone C34205B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932149 ID=FC932149; Name=FC932149; organism=Citrus clementina; type=EST; length=711bp
AAGTACAGGTAATTCAGACCTCTGCGGTTCAACCGAGTGGTTTTCAAGCA
GCTTCCTCTTTGATGGCCAAAAAATTGATTTGGGCTTTGCCTTTTAAATG
AATGAAGGTTGCAGTCATCAACTTGGATCCTGCTAATGATAGTTTGCCAT
ATGAGTGTGCTGTGAATATCGAGGACCTCGTTAAACTAAGTGATGTGATG
ATGGAGCATGCACTCGGTCCAAATGGAGGTCTTGTGTATTGTATGGACTA
TCTAGAGAAGAATATTGACTGGTTGCAGTCAAAATCGGAACCACTTTTGA
AAGATCATTATCTTCTGTTTGATTTTCCTGGCCAAGTTGAATTATTTTTT
TCTTCATTCCAATGCCAAGAATGTTATCATGAGACTCATAAAGAAGTTAA
ATCTCAGGTTGACTGCAGTGCATCTAGTTGATGCGCATCTTTGCAGTGAC
CCTGGAAAGTATGTTAGTGCTTTGCTTCTCTCGTTGTCTACGATGCTACA
TCTGGAACTTCCCCACGTCAATGTCTTGTCTAAGATCGACTTGATTGAGA
ATTATGGAAAGCTAGCTTTTAATCTTGAGTACTATACGGATGTGCAAGAT
TTGTCGTATTTACAGCATGCTCTGGGTCAGGACCCTCGTTCTGCTAAGTA
CAGAAAGCTTACAAGGAGCTGTGTGATGTAATAGAGACTACAGTCTGGTC
AATTTTCACCT
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