FC932153

Overview
NameFC932153
Unique NameFC932153
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932153_ssr472 microsatellite FC932153_ssr472:472..483. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15459 contig Ccv1_Contig15459:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932153 vs. ExPASy Swiss-Prot
Match: UBAX1_ARATH (UBA and UBX domain-containing protein At4g15410 OS=Arabidopsis thaliana GN=At4g15410 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 99/220 (45.00%), Postives = 123/220 (55.91%), Query Frame = 1 
Query:   52 EANSSLINSFVEITSSTKDEALFFLESHQWNLDAAVSTFLDNXXXXXXXXXXXXXV--ATLPAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPYELRSRSRPGKKEDKKAATG--TSR-----GGIRTLADLNRTPPGGAXXXXXXXEPQQYYTGGEKSGMLVQDPTKGNQVDEIFNQARQSAVERPDLRASSSSKAFTGTARLLSGETVSSAP 684
            E N +LINSF+EITSS+++EA FFLESH WNLDAAVSTFLDN                ++  A                                   PY LRSR   G+ ++ +  +G  +SR     G IRT ADLNR+P  G        E  +YYTGG+KSGM+VQDP K   VDE+F+QARQSAV+RP   + S+S +FTG ARLLSGE VSS+P
Sbjct:    4 ETNENLINSFIEITSSSREEANFFLESHTWNLDAAVSTFLDNDAAAAAEPNPTGPPPPSSTIAGAQSPSQSHSPDYTPSETSPSPSRSRSASPSSRAAPYGLRSRGGAGENKETENPSGIRSSRSRQHAGNIRTFADLNRSPADGEGSDSD--EANEYYTGGQKSGMMVQDPKKVKDVDELFDQARQSAVDRPVEPSRSASTSFTGAARLLSGEAVSSSP 221
The following BLAST results are available for this feature:
BLAST of FC932153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBAX1_ARATH1.836e-3745.00UBA and UBX domain-containing protein At4g15410 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34205B12EF PostHarveN Citrus clementina cDNA clone C34205B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932153 ID=FC932153; Name=FC932153; organism=Citrus clementina; type=EST; length=706bp
GGCGAATCGAAAAATCGAAAACGAATCGGATCAATGGAGAAACCAACAGC
AGAAGCTAACTCTTCTTTAATCAATTCTTTCGTGGAGATCACATCATCCA
CCAAAGACGAAGCTCTCTTCTTCTTGGAGTCTCATCAGTGGAATCTAGAC
GCCGCCGTTTCGACTTTTCTAGACAACGCCGCAGCTGCCACTGCCTCCCC
CGAAGCGTCTCAATCGGTCGCTACTCTCCCTGCCGTTAACTCCCCATCGC
TTTCAAACTCCCCCTCGACCTCTCCGTCTGCGTCTTTGTCTCGTTCCCCG
TCCCGGTCTCGGTCGCCATCACCTGCTGCGGCTCGCGATCCGTACGAGCT
GCGTTCCCGAAGCCGACCGGGGAAGAAGGAGGATAAGAAGGCGGCGACTG
GGACATCACGTGGGGGCATTCGGACTCTTGCTGATCTGAATAGGACTCCT
CCTGGTGGGGCCGATAGCGATGACGACGACGACGAGCCGCAGCAGTATTA
TACTGGTGGTGAGAAGAGCGGGATGCTGGTCCAAGATCCTACCAAAGGAA
ATCAAGTGGATGAAATTTTCAATCAAGCTAGACAATCAGCTGTAGAAAGG
CCTGACCTTCGAGCATCATCAAGCTCAAAAGCCTTCACTGGAACAGCNAG
GTTACTCTCTGGAGAGACAGTATCATCTGCTCCAGCTCCTCCGCCTGAAA
TGTCTC
back to top