FC932155

Overview
NameFC932155
Unique NameFC932155
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932155_ssr78 microsatellite FC932155_ssr78:78..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14159 contig Ccv1_Contig14159:2..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932155 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 4.004e-53
Identity = 96/160 (60.00%), Postives = 120/160 (75.00%), Query Frame = 3
Query:  153 GANTSGDVLKGKENPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKLAEQKTLSSVLPSFCSSAKLFCFPDLSPSLEKHGADANFAVYENKNFTNYGTAGLGGVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSF 632
            G  T G     +ENPF+PKA L+RYW+K +   SP+  FL+SKASPLNAV++AT+SKLA   +L +  P FCS+A LFCFPDL  SLEKH  D  F+VY+ KNFTNYG A  GG +SFKNYS+DGNV  DSFRRYSR++AGH+DKF+ Y  +SNVV++ F
Sbjct:   22 GGRTFGGGFSAEENPFTPKASLVRYWNKEIRGQSPRSEFLISKASPLNAVDSATFSKLAAANSLPTRFPDFCSAANLFCFPDLGASLEKHDDDVKFSVYDQKNFTNYGNARAGGADSFKNYSKDGNVVTDSFRRYSRNAAGHDDKFTVYGENSNVVEEGF 181          
BLAST of FC932155 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.870e-51
Identity = 96/180 (53.33%), Postives = 121/180 (67.22%), Query Frame = 3
Query:  138 VTLAGGANTSGDVLKGKENPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKLAEQKTLSSVLPSFCSSAKLFCFPDLSPSLEKHGADANFAVYENKNFTNYGTAGLGGVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSFXXXXXXXXXXXXDFR 677
            V +AGG   +      + NPF+PKA L+RYW+K +   SP   FLLSKASPL AV +AT++KLA +  L   LP FCS+A LFCFPDL P+LEKH  D  F+VY+ +NFTNYGT   GG +SFK YS++GN   DSFRRYSRD+AGH DKF+ YA +SNVV++ F            DF+
Sbjct:   18 VVIAGGERLTNGGFSPEINPFTPKASLVRYWNKQIHHQSPGSAFLLSKASPLTAVASATFAKLASENALPDRLPDFCSAANLFCFPDLGPTLEKHSNDVKFSVYDQRNFTNYGTIHPGGADSFKKYSQNGNAVTDSFRRYSRDAAGHEDKFTGYADNSNVVEEKFNSYGTSATGGSGDFK 197          
BLAST of FC932155 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.600e-47
Identity = 93/166 (56.02%), Postives = 117/166 (70.48%), Query Frame = 3
Query:  138 VTLAGGANTSGDVLKGKENPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKLAEQKTLSSVLPSFCSSAKLFCFPDLSP-SLEKHGADANFAVYENKNFTNYGTAGLGGVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSF 632
            V  AG   T+G++    ENPF+PKA L+RYW+  ++ +SPKP F LSKASPL AV++  ++ LA    L++    FCS+AKLFCFP+L+  SLEKHG D NFA Y  KNFTNYG+  L G +SFKNYS   N+ VDSFRRYSR+SAGH+D F+ YA   NV D SF
Sbjct:   21 VHFAGAKQTAGNITPS-ENPFTPKASLIRYWNNHINGDSPKPSFFLSKASPLTAVDSTRFASLASNHALNTHHSDFCSAAKLFCFPELAAHSLEKHGDDVNFAAYSGKNFTNYGSDRLSGADSFKNYSGGDNIAVDSFRRYSRNSAGHDDGFTNYAGEVNVADQSF 185          
BLAST of FC932155 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.802e-45
Identity = 97/165 (58.79%), Postives = 115/165 (69.70%), Query Frame = 3
Query:  144 LAGGANTSGDVLKGKENPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKL-AEQKTLSSVLPSFCSSAKLFCFPDLSPSLEKHGADANFAVYENKNFTNYGTAGLG-GVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSF 632
            + GG   SG       NPF+PK YL+RYW K +S + PKP FLL+KASPLNA + ATY+KL A+Q  L++ L +FCSSA L C PDLSPSLEKH  D +FA Y +KNFTNYGT   G GVN+FKNYSE  N+ V+SFRRY R S   N KF  YAS  NV+D SF
Sbjct:   25 VVGGDGESG-------NPFTPKGYLIRYWKKQISNDLPKPWFLLNKASPLNAAQYATYTKLVADQNALTTQLHTFCSSANLMCAPDLSPSLEKHSGDIHFATYSDKNFTNYGTNEPGIGVNTFKNYSEGENIPVNSFRRYGRGSPRDN-KFDNYASDGNVIDQSF 181          
BLAST of FC932155 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.407e-43
Identity = 93/149 (62.42%), Postives = 108/149 (72.48%), Query Frame = 3
Query:  192 NPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKL-AEQKTLSSVLPSFCSSAKLFCFPDLSPSLEKHGADANFAVYENKNFTNYGTAGLG-GVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSF 632
            NPF+PK Y++RYW+K VS + PKP FLL+KASPLNA + ATY+KL A+Q  LS+ L SFCSSA L C PDL PSLEKH  D +F  Y NKNFTNYGT   G GVN+FKNYSED +  V+SFRRY R S   N KF  YA   NV+D SF
Sbjct:   35 NPFTPKGYVIRYWNKHVSNDLPKPWFLLNKASPLNAAQYATYTKLVADQNALSTHLQSFCSSANLMCAPDLLPSLEKHTGDIHFTTYGNKNFTNYGTNEPGIGVNTFKNYSEDAS--VNSFRRYGRGSPRDN-KFDNYAPDGNVIDQSF 180          
BLAST of FC932155 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.291e-39
Identity = 87/155 (56.13%), Postives = 109/155 (70.32%), Query Frame = 3
Query:  162 TSGDVLKGKE-----NPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKL-AEQKTLSSVLPSFCSSAKLFCFPDLSPSLEKHGADANFAVYENKNFTNYGTAGLG-GVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYAS 605
            +S DV+  K+     NPF+PK YL+RYW+K VS + PKP FLL+KASPLNA + ATY+KL A+Q   ++ L SFCSSA L C  DL PSLEKH  D +F  Y +KNFTNYGT   G G NSFKNY+E+ N  V+SFRRY RDS  H+++F  Y +
Sbjct:   20 SSLDVVVAKDGDESGNPFTPKGYLIRYWNKHVSNDLPKPWFLLNKASPLNAAQYATYTKLVADQNAFTTHLQSFCSSANLMCALDLLPSLEKHKGDVHFVSYGDKNFTNYGTKESGLGFNSFKNYTEEENFPVNSFRRYGRDSP-HDNQFDNYGA 173          
BLAST of FC932155 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 63/154 (40.91%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  192 NPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKLAEQKTLSSVLPSFCSSAKLFCFPDLSPS-------LEKHGADANFAVYENKNFTNYGTAGLGGVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSF 632
            NPF+ KA  +RYW++ V  N P P F ++K SPL A + A+++       L  +LP  C+ A L C P  S +       +   G    F  Y N NFTNYG+ G+GG + F  YS D NV  DSFRRY RDS    D F++Y +  NVV  +F
Sbjct:   29 NPFTAKAAFIRYWNRRVPNNRPHPAFFVAKLSPLQAADAASFAA-----ALPRLLPPLCARAALLC-PSASDTETAASLAVGGGGGGGPFKGYSNANFTNYGSGGVGGADGFSAYSPDLNVVGDSFRRYGRDSTRRVDTFASYEAEGNVVTANF 176          
BLAST of FC932155 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 64/179 (35.75%), Postives = 86/179 (48.04%), Query Frame = 3
Query:  192 NPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKLAEQKTLSSVLPSFCSSAKLFCFPDLSPSLEKHGAD-------------------------ANFAVYENKNFTNYGTAGLGGVNSFKNYSE-------DGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSF 632
            +PF+ KA  +RYW++ V  N P P F  +K SPL+A + A +S LA    L S + +FC++A L C      S  K  +D                         A F  YEN NF++YG +G GG + F  YS         G   VDSFRRY + S G ND F++Y +  NV   SF
Sbjct:   64 SPFTAKAAFVRYWNRKVHSNRPHPAFFFAKLSPLSAPDAAAFSTLAAAGQLGSRIRAFCAAASLLCPTTPGSSWSKSSSDGDGAAAAAAPAGGGGGGGGGGDGGAAPFKNYENGNFSSYGNSGGGGADQFAVYSSGQSNGGGGGGGGVDSFRRYGKGSQGRNDSFTSYEAGGNVGTSSF 242          
The following BLAST results are available for this feature:
BLAST of FC932155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
JP650_ARATH4.004e-5360.00Probable polygalacturonase non-catalytic subunit J... [more]
JP630_ARATH2.870e-5153.33Probable polygalacturonase non-catalytic subunit J... [more]
Y639_ARATH5.600e-4756.02Probable polygalacturonase non-catalytic subunit A... [more]
GP1_SOLLC1.802e-4558.79Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
GP2_SOLLC6.407e-4362.42Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
GP3_SOLLC3.291e-3956.13Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
BURPC_ORYSJ6.025e-2540.91BURP domain-containing protein 12 OS=Oryza sativa ... [more]
BURPE_ORYSJ2.143e-2235.75BURP domain-containing protein 14 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionC34205C02EF PostHarveN Citrus clementina cDNA clone C34205C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932155 ID=FC932155; Name=FC932155; organism=Citrus clementina; type=EST; length=702bp
GAACCGACAAACATTCTCCTTCGTCTCAGTTGGAAGAAATAAAAATGAAC
GCAAAACCTAAGCCCATGGAGTCTCTCCTCTCTCTCTTCTCCTTCTTCTT
CGTGCTGCTTTATTCATTTCTCCTCTTAAGTGTTAAGGTTACGTTGGCAG
GTGGCGCCAATACTTCCGGCGACGTCTTAAAAGGCAAAGAAAACCCATTC
TCACCAAAGGCTTACCTGATGCGATACTGGGACAAAACCGTGAGCAAAAA
TTCACCAAAACCACACTTTCTTCTCTCAAAAGCCTCCCCATTGAACGCCG
TCGAAACGGCGACTTATTCCAAACTCGCCGAGCAGAAAACCCTCTCCTCA
GTCCTCCCGTCCTTTTGCTCGTCCGCTAAACTCTTCTGCTTCCCCGACTT
GTCGCCGAGTCTCGAAAAACACGGCGCCGACGCCAACTTCGCTGTTTATG
AAAACAAGAACTTCACCAATTACGGAACCGCTGGACTCGGTGGAGTCAAC
TCCTTCAAGAACTACTCGGAGGACGGAAACGTCGAAGTGGACTCGTTCCG
CCGATACAGCCGCGACTCAGCGGGTCACAATGACAAATTCTCCGCTTACG
CCTCTCATAGCAACGTTGTCGACGACAGCTTCAACACATACGGAAACGGC
GCCACTGGTGGCGCTGGTGATTTCAGAGTTACACAGAGAAGTCACGTCCC
GA
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