FC932158

Overview
NameFC932158
Unique NameFC932158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932158 vs. ExPASy Swiss-Prot
Match: HPPD_ARATH (4-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis thaliana GN=HPD PE=1 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 1.547e-81
Identity = 156/274 (56.93%), Postives = 187/274 (68.25%), Query Frame = 3
Query:   39 KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDAADA--------------------GN---------------------------------SSASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVALRYVSYK-DKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPDVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 698
            KLVGF  FVR+NPKSD+F+V RFHH+EFWC DA +                     GN                                 ++AS+P+FDH +CRSF +SHGL  R++A+EVEDA+ AF+ SVA+GA PSSPP++L+    IAEV+LYGDV LRYVSYK +     +FLPGFE  ++ SSFPLDYGIRRLDHAVGNVPEL P + YV  FTGFH+FAEFTA+DVGT+ESGLNS VLA+NDEMVLLP+NEPV GTKRKSQIQTYL
Sbjct:   25 KLVGFSKFVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLLTSGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAESAFSISVANGAIPSSPPIVLNEAVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLPGFERVEDASSFPLDYGIRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTAESGLNSAVLASNDEMVLLPINEPVHGTKRKSQIQTYL 298          
BLAST of FC932158 vs. ExPASy Swiss-Prot
Match: HPPD_DAUCA (4-hydroxyphenylpyruvate dioxygenase OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.124e-74
Identity = 155/276 (56.16%), Postives = 178/276 (64.49%), Query Frame = 3
Query:   21 TAELLVKLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDAADA--------------------GNS-----------------------------SASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVALRYVSYKDKANHLDFLPGFEPTDEISSFP-LDYGIRRLDHAVGNVPELAPDVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 698
            T+    KLVGF NFVR NPKSD F V RFHH+EFWC DA +                     GNS                             SA++P+F  +   SFAA HGLA R+IA+EV D   AF  SVA GA+P+S PV LD+ A +AEV+LYGDV LR+VS+  +     FLPGFE  +  +SFP LDYGIRRLDHAVGNV EL P V Y+K FTGFHEFAEFTAEDVGT ESGLNSVVLANN+EMVLLP+NEPV+GTKRKSQIQTYL
Sbjct:   18 TSPATFKLVGFNNFVRANPKSDHFAVKRFHHIEFWCGDATNTSRRFSWGLGMPLVAKSDLSTGNSVHASYLVRSANLSFVFTAPYSPSTTTSSGSAAIPSFSASGFHSFAAKHGLAVRAIALEVADVAAAFEASVARGARPASAPVELDDQAWLAEVELYGDVVLRFVSFGREEGL--FLPGFEAVEGTASFPDLDYGIRRLDHAVGNVTELGPVVEYIKGFTGFHEFAEFTAEDVGTLESGLNSVVLANNEEMVLLPLNEPVYGTKRKSQIQTYL 291          
BLAST of FC932158 vs. ExPASy Swiss-Prot
Match: HPPD_SOLSC (4-hydroxyphenylpyruvate dioxygenase OS=Solenostemon scutellarioides PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.774e-69
Identity = 149/270 (55.19%), Postives = 174/270 (64.44%), Query Frame = 3
Query:   39 KLVGFKNFVRQNPKSDRFRVNRFHHVEFWCTDAADA--------------------GNS----------------------------SASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL-DNLAVIAEVQLYGDVALRYVSYKDKANHLDFLPGFEPT-DEISSFPLDYGIRRLDHAVGNVPELAPDVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 698
            KLVG KNFVR NP SD F V+RFHHVEFWC DA +                     GNS                            SAS+PTF  +  R+F +SHGLA R++A++V+ A  A++ +V+ GAKP SPPV+L D    IAEV LYGD  LR+VS    A+   FLPGFE   D +S   LDYGIRRLDHAVGNVP+L P V Y+K FTGFHEFAEFTAEDVGT+ESGLNSVVLANN+E VL P+NEPV+GTKRKSQIQTYL
Sbjct:   17 KLVGHKNFVRSNPMSDHFPVHRFHHVEFWCGDATNTSRRFSWGLGMPLVAKSDLSTGNSAHASYLLRSGELSFVFTAPYSPSLAEPSSASIPTFSFSDHRAFTSSHGLAVRAVAIQVDSASSAYSAAVSRGAKPVSPPVVLADCETAIAEVHLYGDTVLRFVSCGSGADGW-FLPGFEVVGDGVSCQELDYGIRRLDHAVGNVPKLEPVVDYLKKFTGFHEFAEFTAEDVGTAESGLNSVVLANNNENVLFPLNEPVYGTKRKSQIQTYL 285          
BLAST of FC932158 vs. ExPASy Swiss-Prot
Match: HPPD_HORVU (4-hydroxyphenylpyruvate dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.962e-61
Identity = 134/259 (51.74%), Postives = 156/259 (60.23%), Query Frame = 3
Query:   63 VRQNPKSDRFRVNRFHHVEFWCTDAADA--------------------GNSS---------------------------ASLPTFDHAACRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNLAVIAEVQLYGDVALRYVSYKDKANHLDFLPGFEPTDEISSFPLDYGIRRLDHAVGNVPELAPDVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 698
            VR NP+SDRF    FHHVEFWC DAA A                    GNS+                           ASLP+F   A R F+A HG+A RS+A+ V DA  AF  S   GA+P+  PV L      AEV+LYGDV LR+VS+ D  + + FLPGFE      +  +DYG+ R DH VGNVPELAP  AY+  FTGFHEFAEFTAEDVGT+ESGLNSVVLANN E VLLP+NEPV GTKR+SQIQT+L
Sbjct:   28 VRFNPRSDRFHTLSFHHVEFWCADAASAAGRFAFALGAPLAARSDLSTGNSAHASQLLRSGSLAFLFTAPYANGCDAATASLPSFSADAARRFSADHGIAVRSVALRVADAAEAFRASRRRGARPAFAPVDLGRGFAFAEVELYGDVVLRFVSHPDGTD-VPFLPGFEGVTNPDA--VDYGLTRFDHVVGNVPELAPAAAYIAGFTGFHEFAEFTAEDVGTTESGLNSVVLANNSEGVLLPLNEPVHGTKRRSQIQTFL 283          
BLAST of FC932158 vs. ExPASy Swiss-Prot
Match: HPPD_YARLI (4-hydroxyphenylpyruvate dioxygenase OS=Yarrowia lipolytica GN=YALI0B21846g PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 58/175 (33.14%), Postives = 89/175 (50.86%), Query Frame = 3
Query:  210 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNL---AVIAEVQLYGDVALRYV---SYKDKANHLDFLPGFEPT----DEISSFPLDYGIRRLDHAVGNVP--ELAPDVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 698
            HG A + +A EV++ +  F+ +V  G +  S P +L +       A +  YGD     +   SY+       FLPGF  T    D I++F  +  +  +DH VGN    E+     Y +   GFH F     +D+ T  S L SVV+A+ +E + +P+NEP  G K+KSQI+ Y+
Sbjct:  101 HGDAVKDVAFEVDNVEQLFSAAVKKGVRVISEPKVLKDAHGSVTYAVISTYGDTTHTLIERGSYEGA-----FLPGFVDTSANKDPIAAFLPNIELMHIDHCVGNQDWNEMDNACKYYEETLGFHRFWSVDDKDICTEFSALKSVVMASPNEKIKMPVNEPAVG-KKKSQIEEYI 269          
BLAST of FC932158 vs. ExPASy Swiss-Prot
Match: HPPD_NEUCR (4-hydroxyphenylpyruvate dioxygenase OS=Neurospora crassa GN=B23G1.170 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 60/182 (32.97%), Postives = 87/182 (47.80%), Query Frame = 3
Query:  189 CRSFAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDNL----AVIAEVQLYGDVALRYVSYKDKANHLDFLPGFEP------TDEISSFPLDYGIRRLDHAVGNVP--ELAPDVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 698
            C      HG A + +A EV++ D  F+ +VA GA     P  L +        A ++ YGD     +S  D      FLPGF        T ++ S PL     R+DH VGN    E+    A+ +    FH F       + T  S LNS+V+A+ + +V +P+NEP  G K+KSQI+ Y+
Sbjct:  111 CHEHLEKHGDAVKDVAFEVDNVDGVFHKAVAAGADVVQEPTTLTDKMHGSVRTAVIRTYGDTTHTLISRADYNG--PFLPGFRTAAPSSATVQLPSVPL----ARIDHCVGNQDWNEMVSACAFYEQCLSFHRFWSVDDSQICTEFSALNSIVMASENNLVKMPINEPAPG-KKKSQIEEYV 285          
BLAST of FC932158 vs. ExPASy Swiss-Prot
Match: HPPD_TETTH (4-hydroxyphenylpyruvate dioxygenase OS=Tetrahymena thermophila GN=TFA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 54/171 (31.58%), Postives = 82/171 (47.95%), Query Frame = 3
Query:  210 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN---LAVIAEVQLYGDVALRYVSYKDKANHLDFLPGFEP---TDEISSFPLDYGIRRLDHAVGNVPE--LAPDVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 698
            HG   + +A  VED    +N ++  GAK + PP  L +      IA V  YG+V   ++   D      F+PGF      D +++   D     +DH VGN P+  +     + +    FH F       + T  S L S+V+ + D+ + +P+NEP  G KRKSQIQ Y+
Sbjct:  103 HGDGVKDVAFAVEDCHSIYNKAIQRGAKCAYPPQDLKDEHGSVTIAAVHTYGEVIHTFIQRNDYKGF--FMPGFVAHPLKDPLNNVLPDISYNYVDHIVGNQPDNMMTSAADWYEKTLDFHRFWSVDDSMIHTEFSSLRSIVMTDYDQKIKMPINEPADG-KRKSQIQEYI 270          
BLAST of FC932158 vs. ExPASy Swiss-Prot
Match: HPPD_BOVIN (4-hydroxyphenylpyruvate dioxygenase OS=Bos taurus GN=HPD PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 78/253 (30.83%), Postives = 105/253 (41.50%), Query Frame = 3
Query:   78 KSDRFRVNRFHHVEFWCTDAADAGNSSASLPTFDHAACRSFAAS-----------------------------------HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPP-VILDNLAVI--AEVQLYGDVALRYVSYKDKANHLD-FLPGFEPTD----EISSFPLDYGIRRLDHAVGNVPE---LAPDVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 698
            K +R R   FH V FW  +A  A +   S   F+  A +                                        HG   + IA EVED D     +   GAK    P V  D L  +  A +Q YGD     V   +K N+   FLPGFE       ++S  P    +  +DH VGN P+   ++    Y+K+   FH F       V T  S L SVV+AN +E + +P+NEP  G K+KSQIQ Y+
Sbjct:   10 KPERGRFLHFHSVTFWVGNAKQAASYYCSKLGFEPLAYKGLETGSREVVSHVVKQGQIVFVFSSALNPWNKEMGDHLVKHGDGVKDIAFEVEDCDYIVQKARERGAKIVREPWVEQDKLGKVKFAVLQTYGDTTHTLV---EKMNYTGRFLPGFEAPPFMDPQLSKLP-SCSLEIIDHIVGNQPDQEMVSASEWYLKNLQ-FHRFWSVDDTQVHTEYSSLRSVVVANYEESIKMPINEPAPG-KKKSQIQEYV 256          
BLAST of FC932158 vs. ExPASy Swiss-Prot
Match: HPPD1_ASPFU (Probable 4-hydroxyphenylpyruvate dioxygenase 1 OS=Aspergillus fumigatus GN=AFUA_2G04200 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 59/172 (34.30%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  210 HGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVIL--DNLAV-IAEVQLYGDVALRYVSYKDKANHLDFLPGFEPT----DEISSFPLDYGIRRLDHAVGNVP--ELAPDVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 698
            HG   + +A EV+  D  F  +  +GAK  S P  L  DN  V +A +Q YG+     V  +  + H  FLPG+       D IS       + R+DH VGN    E+     Y +   GFH F     + + T  S L S+V+A+ +E+V +P+NEP  G K++SQI+ Y+
Sbjct:  109 HGDGVKDVAFEVDSVDSVFYAATNNGAKIVSQPRTLEDDNGQVRVATIQTYGETTHTLV--ERGSYHGAFLPGYRMETGVEDPISQLLPGVHLNRIDHCVGNQDWDEMDKVCEYYEKALGFHRFWSVDDKQICTEYSALKSIVMASPNEVVKMPINEPAKG-KKQSQIEEYV 277          
BLAST of FC932158 vs. ExPASy Swiss-Prot
Match: HPPD_XENTR (4-hydroxyphenylpyruvate dioxygenase OS=Xenopus tropicalis GN=hpd PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 73/257 (28.40%), Postives = 105/257 (40.86%), Query Frame = 3
Query:   57 NFVRQNPKSDRFRVNRFHHVEFWCTDAADA----------------GNSSASLPTFDHAACRS-------------------FAASHGLAARSIAVEVEDADVAFNTSVAHGAKPSSPPVILDN---LAVIAEVQLYGDVALRYVSYKDKANHLDFLPGF-EPTDEISSFP-LDYG-IRRLDHAVGNVP--ELAPDVAYVKSFTGFHEFAEFTAEDVGTSESGLNSVVLANNDEMVLLPMNEPVFGTKRKSQIQTYL 698
            ++  +  K  R R   FHH+ FW  +A  A                G  + S     HA  +                        HG   + +A +VED D  F  +  HGA     P I ++       A +Q YGD     + Y      + FLPG+ EP       P L  G +  +DH VGN P  E+ P V + +    FH F     + + T  S L S+V+ N +E + +P+NEP  G K+KSQIQ Y+
Sbjct:    3 SYTDKGEKHARGRFLSFHHLTFWVGNAKQAASFYCDKFGFEPCAYKGLETGSRDVVSHAIKQDKIIFVFQSPLNPGNQEMGQHMIKHGDGVKDVAFQVEDCDFLFQKAKDHGAVVVREPWIEEDEGGKVKYAVLQTYGDTTHTLLEYLGPYRGV-FLPGYKEPLFRDPLLPTLPSGCLSFIDHIVGNQPDNEMVPIVEWYQKCLLFHRFWSVDDKQIHTEYSSLRSIVVTNYEETIKMPINEPAAG-KKKSQIQEYV 257          
The following BLAST results are available for this feature:
BLAST of FC932158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
HPPD_ARATH1.547e-8156.934-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis... [more]
HPPD_DAUCA3.124e-7456.164-hydroxyphenylpyruvate dioxygenase OS=Daucus caro... [more]
HPPD_SOLSC1.774e-6955.194-hydroxyphenylpyruvate dioxygenase OS=Solenostemo... [more]
HPPD_HORVU3.962e-6151.744-hydroxyphenylpyruvate dioxygenase OS=Hordeum vul... [more]
HPPD_YARLI6.621e-1633.144-hydroxyphenylpyruvate dioxygenase OS=Yarrowia li... [more]
HPPD_NEUCR8.648e-1632.974-hydroxyphenylpyruvate dioxygenase OS=Neurospora ... [more]
HPPD_TETTH9.561e-1531.584-hydroxyphenylpyruvate dioxygenase OS=Tetrahymena... [more]
HPPD_BOVIN9.561e-1530.834-hydroxyphenylpyruvate dioxygenase OS=Bos taurus ... [more]
HPPD1_ASPFU9.561e-1534.30Probable 4-hydroxyphenylpyruvate dioxygenase 1 OS=... [more]
HPPD_XENTR1.631e-1428.404-hydroxyphenylpyruvate dioxygenase OS=Xenopus tro... [more]

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Properties
Property NameValue
Genbank descriptionC34205C05EF PostHarveN Citrus clementina cDNA clone C34205C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932158 ID=FC932158; Name=FC932158; organism=Citrus clementina; type=EST; length=698bp
GAAGAATAATGGGCAAAGAAACCGCTGAATTGCTGGTCAAGCTCGTCGGG
TTCAAAAACTTCGTCCGCCAGAATCCCAAATCGGACCGGTTCCGAGTGAA
CCGCTTCCACCATGTCGAGTTCTGGTGCACTGACGCCGCCGATGCTGGCA
ACTCCTCAGCATCTCTCCCGACTTTCGACCACGCAGCTTGCCGCAGTTTC
GCCGCGTCTCATGGGCTCGCCGCGCGGTCGATTGCTGTTGAAGTTGAAGA
CGCCGACGTTGCTTTCAACACCAGCGTGGCTCACGGTGCTAAGCCCTCCT
CTCCTCCTGTGATTCTCGATAACCTTGCTGTGATTGCCGAGGTCCAGTTA
TACGGCGACGTCGCTTTGCGTTATGTTAGTTATAAAGATAAAGCGAATCA
TCTTGATTTCCTGCCGGGTTTCGAACCGACGGATGAGATTTCATCGTTTC
CGTTGGATTACGGAATCAGGCGGCTCGATCACGCCGTCGGCAACGTTCCG
GAACTCGCTCCGGATGTTGCTTATGTGAAATCATTCACTGGGTTTCACGA
GTTCGCCGAGTTCACAGCCGAAGACGTCGGCACGAGTGAGAGTGGACTCA
ACTCAGTGGTGTTAGCAAACAACGATGAAATGGTATTGCTCCCGATGAAC
GAGCCCGTGTTTGGGACGAAGCGTAAGAGTCAGATACAGACCTATCTG
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