FC932162

Overview
NameFC932162
Unique NameFC932162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14332 contig Ccv1_Contig14332:430..1110. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.429e-92
Identity = 161/224 (71.88%), Postives = 192/224 (85.71%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKL-ADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQG*KMPEAAAT 669
            P E QAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP EVNA+L++PT Y SA + AGDAQARD L+RV+ECLD+++CETFQD ITWARL+FEDYF++RVKQLTFTFPE+  TS+G PFWSAPKRFPRP++FS  D S L F++AA+ILRAET+GIPIP+W K+P KL A+AV+KVIVPDFQPK+ VKI T EKATS+S+ S+DDA VI EL+   K+ E + T
Sbjct:  618 PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPTEVNAFLSNPTTYISAARTAGDAQARDQLERVIECLDRDKCETFQDSITWARLKFEDYFSNRVKQLTFTFPEDSMTSSGAPFWSAPKRFPRPVEFSSSDQSQLSFILAAAILRAETFGIPIPEWAKTPNKLAAEAVDKVIVPDFQPKQGVKIVTHEKATSLSSASVDDAAVIEELIA--KLEEVSKT 839          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.437e-92
Identity = 161/224 (71.88%), Postives = 192/224 (85.71%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKL-ADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQG*KMPEAAAT 669
            P E QAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP EVNA+L++PT Y SA + AGDAQARD L+RV+ECLD+++CETFQD ITWARL+FEDYF++RVKQLTFTFPE+  TS+G PFWSAPKRFPRP++FS  D S L F++AA+ILRAET+GIPI +W K+P KL A+AV+KVIVPDFQPK+ VKI TDEKATS+S+ S+DDA VI EL+   K+ E + T
Sbjct:  618 PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPTEVNAFLSNPTTYISAARTAGDAQARDQLERVIECLDRDKCETFQDSITWARLKFEDYFSNRVKQLTFTFPEDSMTSSGAPFWSAPKRFPRPVEFSSSDPSQLSFILAAAILRAETFGIPISEWAKTPNKLAAEAVDKVIVPDFQPKQGVKIVTDEKATSLSSASVDDAAVIEELIA--KLEEVSKT 839          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 3.642e-88
Identity = 148/212 (69.81%), Postives = 179/212 (84.43%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELL 636
            P E QAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTP EVN++L++P +YA+AM+ AGDAQAR+ L+RV ECL+K+RC TF DCI+WARL+FEDYF++RVKQLTFTFPE+  TS G PFWSAPKRFPR LQFS  D SHL F+M+ASILRAE++G+ IP+W K   KLAD VNK+ VP F+PK+ V I TDEKA+++S+ S+DD  VI +LL
Sbjct:  621 PPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPNEVNSFLSNPAQYAAAMRKAGDAQARELLERVSECLNKDRCSTFDDCISWARLKFEDYFSNRVKQLTFTFPEDAATSMGAPFWSAPKRFPRALQFSAADQSHLNFIMSASILRAESFGVAIPEWAKDTSKLADVVNKIAVPTFEPKQGVNIVTDEKASNLSSTSVDDVAVIEDLL 832          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBA1_DICDI (Ubiquitin-like modifier-activating enzyme 1 OS=Dictyostelium discoideum GN=uba1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.126e-39
Identity = 85/201 (42.29%), Postives = 123/201 (61.19%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGS 603
            P E   P+CT+H+FP+ I+H + WAR  FEGL +     VN+YLT+P  Y  ++K        + L  +   L  +R   F  CI WARL+FE+YF + ++QL + FP+++ T+ GTPFWS PKR P PL+F V++  HL+F++AA+ LRA  YGI     ++   K A     VIVPDF PK+ VKI+T E   + S+ +
Sbjct:  584 PPEKGIPVCTLHNFPNAIEHTIQWARDTFEGLFKNNADNVNSYLTNPA-YVQSLKTQNPFVRLETLASIKASL-MDRPLDFNQCIAWARLKFEEYFNNNIEQLLYNFPKDMVTTTGTPFWSGPKRAPTPLKFDVENPLHLEFIVAAANLRAFNYGIKAETNIEVIQKQA---ANVIVPDFTPKK-VKIQTSENEPAPSSNT 778          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBA1_YEAST (Ubiquitin-activating enzyme E1 1 OS=Saccharomyces cerevisiae GN=UBA1 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.240e-37
Identity = 80/224 (35.71%), Postives = 121/224 (54.02%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSP--VKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDAVVINELLQG*KMPEAAA 666
            P E   P+CT+ SFP+ IDH + WA+S F+G    +   VN YLT P      +K +GD +    L+ + + L  +    F+DCI WARL FE  F   +KQL F FP++  TSNG PFWS  KR P PL+F + +  H  F++A + LRA  YGI   D    P   +    ++ +I+P+F P  N+KI+ ++     +  + + +  I++L+     P   A
Sbjct:  592 PPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKGV--LESISDSLSSKP-HNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNANLKIQVNDDDPDPNANAANGSDEIDQLVSSLPDPSTLA 812          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 4.991e-37
Identity = 79/205 (38.54%), Postives = 118/205 (57.56%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDA 615
            P E   P+CT+ +FP+ I+H L WAR EFEGL ++    VN YLT P      ++ AG  Q  + L+ V   L  +R +T+ DC+TWA   +   +++ ++QL   FP +  TS+G PFWS PKR P PL F V++  HL ++MAA+ L A+TYG+      +    +A  +  V VP+F PK  VKI   ++    +  S+DD+
Sbjct:  624 PPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDPKFVERTLRLAG-TQPLEVLEAVQRSLVLQRPQTWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNPLHLDYVMAAANLFAQTYGL---TGSQDRAAVATFLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS 824          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.452e-36
Identity = 78/205 (38.05%), Postives = 117/205 (57.07%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDA 615
            P E   P+CT+ +FP+ I+H L WAR EFEGL ++    VN YLT P      ++ AG  Q  + L+ V   L  +R +T+ DC+TWA   +   +++ ++QL   FP +  TS+G PFWS PKR P PL F V +  HL +++AA+ L A+TYG+      +    +A  +  V VP+F PK  VKI   ++    +  S+DD+
Sbjct:  624 PPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDPKFVERTLRLAG-TQPLEVLEAVQRSLVLQRPQTWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVSNPLHLDYVIAAANLFAQTYGL---TGSQDRAAVATLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS 824          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBA1_RAT (Ubiquitin-like modifier-activating enzyme 1 OS=Rattus norvegicus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.477e-36
Identity = 78/205 (38.05%), Postives = 116/205 (56.59%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDA 615
            P E   P+CT+ +FP+ I+H L WAR EFEGL ++    VN YLT        ++ AG  Q  + L+ V   L  +R +T+ DC+TWA   +   + + ++QL   FP +  TS+G PFWS PKR P PL F V++  HL ++MAA+ L A+TYG+      +    +A  +  V VP+F PK  VKI   ++    +  S+DD+
Sbjct:  624 PPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAG-TQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGL---TGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS 824          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBA1_MOUSE (Ubiquitin-like modifier-activating enzyme 1 OS=Mus musculus GN=Uba1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.477e-36
Identity = 78/205 (38.05%), Postives = 116/205 (56.59%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDA 615
            P E   P+CT+ +FP+ I+H L WAR EFEGL ++    VN YLT        ++ AG  Q  + L+ V   L  +R +T+ DC+TWA   +   + + ++QL   FP +  TS+G PFWS PKR P PL F V++  HL ++MAA+ L A+TYG+      +    +A  +  V VP+F PK  VKI   ++    +  S+DD+
Sbjct:  624 PPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDSKFVERTLRLAG-TQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVNNTLHLDYVMAAANLFAQTYGL---TGSQDRAAVASLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS 824          
BLAST of FC932162 vs. ExPASy Swiss-Prot
Match: UBA1_RABIT (Ubiquitin-like modifier-activating enzyme 1 OS=Oryctolagus cuniculus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.413e-36
Identity = 77/205 (37.56%), Postives = 116/205 (56.59%), Query Frame = 1
Query:    1 PAENQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLTSPTEYASAMKNAGDAQARDNLDRVLECLDKERCETFQDCITWARLRFEDYFADRVKQLTFTFPENVTTSNGTPFWSAPKRFPRPLQFSVDDLSHLQFLMAASILRAETYGIPIPDWVKSPVKLADAVNKVIVPDFQPKENVKIETDEKATSMSTGSIDDA 615
            P E   P+CT+ +FP+ I+H L WAR EFEGL ++    VN YLT P      ++ AG  Q  + L+ V   L  +  +++ DC+TWA   +   +++ ++QL   FP +  TS+G PFWS PKR P PL F V +  HL ++MAA+ L A+TYG+      +    +A  +  V VP+F PK  VKI   ++    +  S+DD+
Sbjct:  624 PPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTDPKFVERTLRLAG-TQPLEVLEAVQRSLVLQLPQSWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDVSNPLHLDYVMAAANLFAQTYGLA---GSQDRAAVATLLQSVQVPEFTPKSGVKIHVSDQELQSANASVDDS 824          
The following BLAST results are available for this feature:
BLAST of FC932162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
UBE11_WHEAT1.429e-9271.88Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBE12_WHEAT2.437e-9271.88Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE13_WHEAT3.642e-8869.81Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
UBA1_DICDI3.126e-3942.29Ubiquitin-like modifier-activating enzyme 1 OS=Dic... [more]
UBA1_YEAST2.240e-3735.71Ubiquitin-activating enzyme E1 1 OS=Saccharomyces ... [more]
UBA1_HUMAN4.991e-3738.54Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1_BOVIN1.452e-3638.05Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]
UBA1_RAT2.477e-3638.05Ubiquitin-like modifier-activating enzyme 1 OS=Rat... [more]
UBA1_MOUSE2.477e-3638.05Ubiquitin-like modifier-activating enzyme 1 OS=Mus... [more]
UBA1_RABIT9.413e-3637.56Ubiquitin-like modifier-activating enzyme 1 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC34205C09EF PostHarveN Citrus clementina cDNA clone C34205C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932162 ID=FC932162; Name=FC932162; organism=Citrus clementina; type=EST; length=681bp
CCAGCTGAAAACCAAGCTCCCATGTGCACAGTTCATTCATTCCCACACAA
CATTGATCACTGCCTGACTTGGGCTCGGTCTGAGTTTGAGGGTTTGCTTG
AGAAGACACCAGCAGAAGTAAATGCCTATCTGACTAGTCCCACTGAGTAC
GCATCTGCAATGAAGAATGCTGGTGATGCTCAGGCCAGGGACAACTTGGA
CCGCGTCCTTGAATGCCTTGATAAGGAGAGATGTGAAACATTCCAAGACT
GTATCACCTGGGCCCGTCTAAGGTTTGAAGACTACTTTGCTGACCGTGTG
AAGCAATTGACATTTACTTTTCCTGAGAATGTTACAACCAGCAACGGGAC
ACCCTTCTGGTCAGCCCCCAAGCGTTTCCCCCGCCCTTTGCAGTTCTCAG
TTGATGATCTCAGTCACCTTCAATTTTTGATGGCAGCATCAATATTACGA
GCTGAAACATATGGCATTCCTATCCCTGATTGGGTCAAGTCACCCGTAAA
GCTAGCTGATGCTGTTAACAAAGTGATAGTCCCTGATTTCCAGCCCAAGG
AAAATGTAAAGATTGAGACAGATGAGAAAGCCACAAGTATGTCCACTGGA
TCAATTGATGATGCTGTAGTAATCAATGAGTTGCTCCAAGGTTAGAAAAT
GCCAGAAGCAGCTGCCACAGGNTACAGATGA
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