FC932163

Overview
NameFC932163
Unique NameFC932163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: DUS12_HUMAN (Dual specificity protein phosphatase 12 OS=Homo sapiens GN=DUSP12 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.722e-23
Identity = 69/168 (41.07%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  151 LVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNRGSPIYKRFRLKVLGDSYNRGEKIDSSKFGADP-----GLPVEVLSGVEAIPNGGDNRTPAYRX*KCRR 636
            L R+ VP  D    +LL +LD C  FI + R EG  VLVHC AGVSRS AIITA+LM+T+QL  E A E L+        N+GF  QLK+++ MG++V+  S IYK++RL+ + + Y   + +    F  DP     GL  EVL                Y+  KCRR
Sbjct:   75 LWRLFVPALDKPETDLLSHLDRCVAFIGQARAEGRAVLVHCHAGVSRSVAIITAFLMKTDQLPFEKAYEKLQILKPEAKMNEGFEWQLKLYQAMGYEVDTSSAIYKQYRLQKVTEKYPELQNLPQELFAVDPTTVSQGLKDEVL----------------YKCRKCRR 226          
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: DUS12_RAT (Dual specificity protein phosphatase 12 OS=Rattus norvegicus GN=Dusp12 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.115e-22
Identity = 56/132 (42.42%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  151 LVRMTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNRGSPIYKRFRLKVLGDSYNRGEKIDSSKFGADP 543
            L  + VP  D    +LL +LD C  FI + R EG  VLVHC AGVSRS A++TA++M+TEQL+ E A E+L+        N+GF  QLK++E MG +V+  S +YK++RL+ + + Y     +    F  DP
Sbjct:   74 LQSLFVPALDKPETDLLSHLDRCVAFIGQARSEGRAVLVHCHAGVSRSVAVVTAFIMKTEQLTFEKAYENLQTIKPEAKMNEGFEWQLKLYEAMGHEVHTSSAVYKQYRLQKVTEKYPELRNLPRELFAVDP 205          
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: DUS12_MOUSE (Dual specificity protein phosphatase 12 OS=Mus musculus GN=Dusp12 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.580e-20
Identity = 52/127 (40.94%), Postives = 76/127 (59.84%), Query Frame = 1
Query:  166 VPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNRGSPIYKRFRLKVLGDSYNRGEKIDSSKFGADP 543
            VP  D    +LL +LD C  FI + R EG  VLVHC AGVSRS A++ A++M+T+QL+ E A + LR        N+GF  QLK++E MG++V+  S  YK++RL+ + +   +   +    F  DP
Sbjct:   79 VPALDKPETDLLSHLDRCVAFIGQARSEGRAVLVHCHAGVSRSVAVVMAFIMKTDQLTFEKAYDILRTVKPEAKVNEGFEWQLKLYEAMGYEVDTSSAFYKQYRLQKVTEKCPKLWNLPQELFAVDP 205          
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: DUS19_HUMAN (Dual specificity protein phosphatase 19 OS=Homo sapiens GN=DUSP19 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.052e-17
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 1
Query:  163 TVPIRDMESENLLDYLDVCFDFIDR-RRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFEE 426
            ++ I D+   N+L Y   CF+FI+  +RK+G VLVHC AGVSR+AAI+  +LM +EQ S   A   ++ +  S+CPN GF+EQL+ ++E
Sbjct:  114 SISILDLPETNILSYFPECFEFIEEAKRKDGVVLVHCNAGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNARPSICPNSGFMEQLRTYQE 202          
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: DUS19_MOUSE (Dual specificity protein phosphatase 19 OS=Mus musculus GN=Dusp19 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 42/100 (42.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:  163 TVPIRDMESENLLDYLDVCFDFIDRRR-KEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNRGSPI 459
            T+ I D+   N+L Y   CF+FI++ + K+G VLVHC AGVSR+AAI+  +LM +E+ +   AL  ++++  S+CPN GF+EQL+ + ++G + N G  +
Sbjct:  113 TISILDVPETNILSYFPECFEFIEQAKLKDGVVLVHCNAGVSRAAAIVIGFLMSSEEATFTTALSLVKEARPSICPNPGFMEQLRTY-QVGKESNGGDKV 211          
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: DUSP4_DICDI (Probable dual specificity protein phosphatase DDB_G0281963 OS=Dictyostelium discoideum GN=DDB_G0281963 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.583e-16
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  127 EYAGKDLKLVR-MTVPIRDMESENLLDYLDVCFDFIDRRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNRGSP 456
            E+  K  K+ + + + I D  S +++ Y D  F FI+  RK+GGVLVHCFAG+SRSA I  AY+MR   +S EDA   +  +   + PN+ F++QLK + E+  K NR +P
Sbjct:   38 EFQPKWTKIYKYLHIDIYDSPSVDIMKYFDKTFQFIEEGRKDGGVLVHCFAGISRSATICIAYIMRKLNISFEDAHGLVSDARPIIYPNESFIKQLKKY-ELILKKNRENP 147          
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: PVH1_SCHPO (Tyrosine-protein phosphatase yvh1 OS=Schizosaccharomyces pombe GN=yvh1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  172 IRDMESENLLDYLDVCFDFID-RRRKEGGVLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFEEMGFKVNRGSPIYKRFRLKVLGD 492
            I D  S+N+L Y +    FI     K   VLVHCFAG+SRS  ++ AYLM+    ++E+AL  + +    + PN  FL QL+++ E  ++++R    Y+++  +  GD
Sbjct:   98 IEDSSSQNILQYFEKSNKFIAFALSKNAKVLVHCFAGISRSVTLVAAYLMKENNWNTEEALSHINERRSGISPNANFLRQLRVYFECNYQLDRSLRPYRQWLFRRYGD 205          
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: DUS5_RAT (Dual specificity protein phosphatase 5 OS=Rattus norvegicus GN=Dusp5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.491e-13
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  166 VPIRDMESENLLDYLDVCFDFIDRRRKEGG-VLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFE 423
            +P+ D  + ++  +     DFID  R+EGG VLVHC AGVSRS  I  AYLM+T+Q   ++A E ++Q    V PN GF+ QL  +E
Sbjct:  228 IPVEDSHTADISSHFQEAIDFIDCVREEGGKVLVHCEAGVSRSPTICMAYLMKTKQFRLKEAFEYIKQRRSVVSPNFGFMGQLLQYE 314          
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: PTP3_CHLMO (Dual specificity protein phosphatase OS=Chlamydomonas moewusii GN=VH-PTP13 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 36/91 (39.56%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  160 MTVPIRDMESENLLDYLDVCFDFIDRRRKEGGV-LVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFEEM 429
            +++PI DME ++++  L  CF F+ + +  GGV LVHC AG+SRSA+++ AYLM T+ +   +A   +R++   V PN GF  QL+  + +
Sbjct:  135 LSLPILDMEGQDIVALLPSCFQFLQQAQASGGVCLVHCLAGISRSASVVIAYLMWTQGMPYTEARAMVRRARSKVYPNTGFTLQLQELDRL 225          
BLAST of FC932163 vs. ExPASy Swiss-Prot
Match: DUS8_HUMAN (Dual specificity protein phosphatase 8 OS=Homo sapiens GN=DUSP8 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.778e-13
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  160 MTVPIRDMESENLLDYLDVCFDFIDRRRKEG-GVLVHCFAGVSRSAAIITAYLMRTEQLSSEDALESLRQSCESVCPNDGFLEQLKMFE 423
            M VPI D   E LL +LD   +FID+ +     V+VHC AG+SRSA I  AY+M+T  +SS+DA   ++    S+ PN  FL QL  +E
Sbjct:  209 MRVPINDNYCEKLLPWLDKSIEFIDKAKLSSCQVIVHCLAGISRSATIAIAYIMKTMGMSSDDAYRFVKDRRPSISPNFNFLGQLLEYE 297          
The following BLAST results are available for this feature:
BLAST of FC932163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DUS12_HUMAN3.722e-2341.07Dual specificity protein phosphatase 12 OS=Homo sa... [more]
DUS12_RAT4.115e-2242.42Dual specificity protein phosphatase 12 OS=Rattus ... [more]
DUS12_MOUSE8.580e-2040.94Dual specificity protein phosphatase 12 OS=Mus mus... [more]
DUS19_HUMAN3.052e-1746.07Dual specificity protein phosphatase 19 OS=Homo sa... [more]
DUS19_MOUSE1.978e-1642.00Dual specificity protein phosphatase 19 OS=Mus mus... [more]
DUSP4_DICDI2.583e-1642.34Probable dual specificity protein phosphatase DDB_... [more]
PVH1_SCHPO1.200e-1335.19Tyrosine-protein phosphatase yvh1 OS=Schizosacchar... [more]
DUS5_RAT3.491e-1344.83Dual specificity protein phosphatase 5 OS=Rattus n... [more]
PTP3_CHLMO4.560e-1339.56Dual specificity protein phosphatase OS=Chlamydomo... [more]
DUS8_HUMAN7.778e-1344.94Dual specificity protein phosphatase 8 OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionC34205C10EF PostHarveN Citrus clementina cDNA clone C34205C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932163 ID=FC932163; Name=FC932163; organism=Citrus clementina; type=EST; length=646bp
ATCCCCTCCAAGGAGATTAAGAAGGTTTATGCTGGTGGATCCGGTGATGG
TGGCTCGGGCTCTGTGGATGATCTAGGTGATGGGTCAAGAAGCTGTTTGT
CCCCCACAAAACTCTTGTACTCATTGGAATATGCTGGCAAGGATTTGAAG
CTGGTGAGAATGACTGTGCCTATAAGGGATATGGAAAGTGAGAATTTGTT
GGATTATTTGGATGTATGTTTTGATTTCATTGATCGGAGAAGAAAGGAGG
GGGGTGTTTTGGTTCATTGCTTTGCAGGAGTGTCCAGGAGTGCAGCTATC
ATTACAGCATATTTGATGAGAACTGAGCAACTATCTTCAGAAGATGCACT
TGAATCTCTACGGCAGAGCTGTGAGTCTGTTTGTCCCAATGATGGCTTTT
TAGAACAGTTGAAAATGTTTGAAGAAATGGGCTTTAAGGTCAATCGTGGT
AGCCCCATTTACAAGCGATTTCGCCTGAAAGTATTAGGTGATTCTTATAA
TCGTGGAGAGAAAATAGACAGTTCCAAATTTGGAGCTGATCCTGGCTTGC
CAGTGGAAGTTTTGTCAGGAGTAGAAGCAATTCCAAATGGAGGAGATAAT
CGTACCCCTGCGTACCGGTGNTAGAAATGTCGAAGAGTTGTTGCCT
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