FC932164

Overview
NameFC932164
Unique NameFC932164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10851 contig Ccv1_Contig10851:37..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC932164 vs. ExPASy Swiss-Prot
Match: PSMF1_ARATH (Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.548e-56
Identity = 116/211 (54.98%), Postives = 151/211 (71.56%), Query Frame = 2 
Query:   80 SVMAVIRAARPTFRNDFDKIAFVVHASFLASGHVLTATGPAADTEFTSPSSSTDEVGIDHWNELADDNYAFLFINPEKGSKKVLVKCLVMNSKLLVDALAEGASEPVHLEINVADYVAE-NGGNYSDKFKNLEKLVTDLDKDIISKLYGSPKTASSERCEGSRPIVTDPAFGFEHD---GPQSYVTGIPVPPINPSRG-SDLFPGPGAGMY 697
            +VMA+IR ARP FRN+ DK+AF +H+SF+ASG++LTATG  A  +    SSS ++VGI+ WNE  +  YAF++ NP+KGSKK+LVKCL M+ KLLVDA+A+G +EP HLEI V DY  E N G+YS +FKNL+KLVTDL  +II KL G PK  +S R + S     +P +  +     GPQ + +G+ VPPI  + G SDLFPGPGAGMY
Sbjct:    6 TVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQNDVGIEGWNEF-EGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDYAEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTPNPLGPQIHPSGVVVPPIPGNGGYSDLFPGPGAGMY 214
The following BLAST results are available for this feature:
BLAST of FC932164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMF1_ARATH8.548e-5654.98Probable proteasome inhibitor OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC34205C11EF PostHarveN Citrus clementina cDNA clone C34205C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932164 ID=FC932164; Name=FC932164; organism=Citrus clementina; type=EST; length=698bp
AGAAAAGACCTCGCTCTCTCATAAACTCTAAAAACAAAGACAGGAAAAAA
ATTAAAAAAAAAAAATGCCGAACGAGAAATCAGTGATGGCCGTGATAAGA
GCGGCAAGACCTACCTTTCGAAACGACTTCGATAAAATTGCATTTGTCGT
TCACGCCTCTTTCCTTGCCAGTGGACACGTGTTAACCGCCACTGGACCTG
CCGCGGACACCGAGTTCACCTCTCCCTCCTCCTCCACCGATGAAGTAGGA
ATTGATCACTGGAACGAACTAGCTGATGATAATTACGCGTTTCTGTTTAT
AAACCCTGAGAAAGGTTCAAAGAAAGTGTTGGTGAAGTGTCTCGTGATGA
ACAGTAAATTGCTGGTTGATGCATTAGCTGAGGGAGCTTCGGAGCCTGTG
CATCTCGAAATCAATGTTGCAGACTACGTTGCAGAAAATGGAGGCAATTA
CTCTGATAAGTTCAAGAATTTAGAGAAGCTTGTGACAGATCTTGATAAAG
ACATTATTTCAAAATTATACGGCTCCCCAAAAACAGCTAGCTCAGAAAGA
TGTGAAGGATCAAGGCCTATTGTAACCGATCCTGCTTTTGGATTTGAGCA
TGACGGGCCTCAATCTTATGTTACAGGAATTCCTGTTCCTCCTATCAACC
CCAGTCGTGGTAGCGATCTTTTTCCTGGCCCTGGTGCTGGAATGTATC
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