FC932165

Overview
NameFC932165
Unique NameFC932165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9376 contig Ccv1_Contig9376:254..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932165 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.952e-55
Identity = 111/199 (55.78%), Postives = 136/199 (68.34%), Query Frame = 3
Query:  108 METERKKQE---LRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKXGYTVFGYLPLVPL 695
            METE+K  +   L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP              S KFDEHAPP+AK+V +Q H LI  A++KAQ  V EA+TGGP+AA +YAA E K  ++TNSVK W KLN Y   H M D A+P AA +S +YN LV +MT  GY++ GYLPLVP+
Sbjct:    1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPV 199          
BLAST of FC932165 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 76/205 (37.07%), Postives = 106/205 (51.71%), Query Frame = 3
Query:  123 KKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVH------YAAAESKHLLLTN---------SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKXGYTVFGYLPLVP 692
            +++ L++L F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP             +  + + H P L KR + Q  ++ + A + A  +  E Q  G            Y+  E     L +         +V AW  LN   LF  +A + VPTAA WS+KYN  V    + GYTV  YLPL+P
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIP 220          
BLAST of FC932165 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.547e-27
Identity = 77/210 (36.67%), Postives = 109/210 (51.90%), Query Frame = 3
Query:  114 TERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGG-----------------PRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKXGYTVFGYLPLVP 692
            T+ +K+ L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K+  VP             +  + D   PP+ K+V++Q  S  + A   A+ L  E +  G                 P A   YA  E K      +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+  + GY V  Y+PLVP
Sbjct:   15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVP 222          
BLAST of FC932165 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 71/208 (34.13%), Postives = 105/208 (50.48%), Query Frame = 3
Query:   96 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKXGYTVFGYLPLVP 692
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K G  V  YLPLVP
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVP 224          
BLAST of FC932165 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.780e-23
Identity = 71/208 (34.13%), Postives = 105/208 (50.48%), Query Frame = 3
Query:   96 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKXGYTVFGYLPLVP 692
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K G  V  YLPLVP
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVP 224          
BLAST of FC932165 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.255e-19
Identity = 62/195 (31.79%), Postives = 96/195 (49.23%), Query Frame = 3
Query:  108 METERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKXGYTVFGYLPLVP 692
            M  E +++ L++L F+R A + A+   S+LY YAK  SGPL+  V T+E+ V  VV PVY     +P             +    D   PP+ K+V++Q +S+ + A +    +       G +       A  +      +V  W  LN   L   +A++ VPTA  +S+KYN +V   T+ GY V  YLPL+P
Sbjct:    1 MAEEVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLP 191          
BLAST of FC932165 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 59/198 (29.80%), Postives = 93/198 (46.97%), Query Frame = 3
Query:  126 KQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPR--------AAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKXGYTVFGYLPLVPL 695
            + +L+HL F+++AA+    C S+LY+ AK N+GPL+  V  +E  V  V+ P+Y+KF  VP                  + + P L K+ +SQ    +  A++  +  V++      R        AA +YAA              W  LN   LF  +A + +PTA  WS+KYN  V  +    Y    YLP++P+
Sbjct:   38 EMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQA---LTVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPI 220          
BLAST of FC932165 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 60/169 (35.50%), Postives = 80/169 (47.34%), Query Frame = 3
Query:  195 LYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRK---FDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKXGYTVFGYLPLVP 692
            LY YAK  +GPL+  V TVE AV  VV PVY +F  VP             A RK    D H P   K+V+SQ  S++            E +  G         ++ +      +V AW KLN   LF  +A+  +P AA  ++KYN ++V   + GY V  YLPLVP
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKY-------ADRKVGELDRHVPSNVKKVSSQARSVVS-----------EVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVP 156          
The following BLAST results are available for this feature:
BLAST of FC932165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y1736_ARATH1.952e-5555.78REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI4.099e-2937.07Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y3550_ARATH8.547e-2736.67REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
Y5513_ORYSJ9.780e-2334.13REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI9.780e-2334.13REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRPP_HEVBR2.255e-1931.79Small rubber particle protein OS=Hevea brasiliensi... [more]
Y2778_ARATH2.493e-1829.80REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
SRP_PHAVU2.493e-1835.50Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34205C12EF PostHarveN Citrus clementina cDNA clone C34205C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932165 ID=FC932165; Name=FC932165; organism=Citrus clementina; type=EST; length=708bp
GATGTTGGATTTGTTACATATTATTGAACGCTGCAATCAATAGCAAGCTA
ATTTCTCGCGAGATCTAAAAGCAATATCGAATAATTCATCTTTTGCGCAG
TGAAGATATGGAGACTGAGAGGAAGAAACAGGAACTGAGGCATCTTGGAT
TTATGAGGATAGCCGCGATTAAGGCTCTGGTGTGCGTGTCGAGTTTGTAC
GACTACGCAAAACGCAACTCGGGGCCGCTACGCTCGCCGGTTGGGACTGT
CGAAAGCGCCGTGACTGCCGTCGTGGGACCTGTTTATCAGAAATTCAAGG
GCGTGCCTGATGATCTCCTCGTTTTTCTTGATAAGAAGGTGGATGATGCT
TCACGCAAGTTTGACGAGCACGCTCCCCCTTTGGCCAAGCGGGTTGCCAG
CCAAGTACATAGTCTAATTGAAACAGCATCACAGAAAGCTCAAAAGCTTG
TGATTGAGGCCCAAACCGGGGGGCCTCGAGCAGCTGTCCATTATGCTGCT
GCTGAGTCTAAACACCTTCTGCTAACAAATTCCGTGAAAGCATGGTATAA
ACTAAACCACTATGCATTGTTCCACACAATGGCAGATATGGCTGTTCCCA
CAGCTGCACAGTGGTCCAAGAAGTATAACCATCTTGTTGTGGAGATGACG
AAGAANGGTTACACAGTCTTTGGCTATCTTCCTTTGGTTCCATTGATGAC
ATAGCCAA
back to top