FC932171

Overview
NameFC932171
Unique NameFC932171
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC932171 vs. ExPASy Swiss-Prot
Match: STK4_DICDI (Serine/threonine-protein kinase 4 homolog A OS=Dictyostelium discoideum GN=krsA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.112e-11
Identity = 47/160 (29.38%), Postives = 78/160 (48.75%), Query Frame = 1 
Query:    4 PAPMLEDKEKWSLVFHDFVAKCLTKEPRARPTAAEMLKHKFIERCKCGATAMLPKI--------EKARQIRASMAQQAQNILSDEPEVNATMGLKLNEDYGDTVPSKPQVQVTNEVLATSTLKKQHTLEDMEEGDFGTVVVHETDKTISKTQCSNIKESS 459
            P P L + EKWS  F+DF+AKCLT++P  RP+A E+LKH FI + K   + ++P I        EK R++   + Q+      +E E         +++ G  V +KP+           +++     ++ EE D GT+V+ +   +      +N  E S
Sbjct:  232 PPPKLTEPEKWSPEFNDFLAKCLTRKPELRPSAEELLKHPFITKAK-SHSLLVPLIDEQDIIINEKGREVALGIEQR-----DEEEEDEDEDSEDSDDNRGTMVRAKPR-----------SMQNSGGEDNDEEYDTGTMVITDNKNSYDTVVFNNDDEDS 374
The following BLAST results are available for this feature:
BLAST of FC932171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
STK4_DICDI9.112e-1129.38Serine/threonine-protein kinase 4 homolog A OS=Dic... [more]
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Properties
Property NameValue
Genbank descriptionC34205D06EF PostHarveN Citrus clementina cDNA clone C34205D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932171 ID=FC932171; Name=FC932171; organism=Citrus clementina; type=EST; length=734bp
GAGCCAGCTCCAATGCTCGAGGATAAAGAGAAATGGTCTCTTGTCTTTCA
TGACTTTGTTGCAAAATGTCTTACCAAGGAACCGCGTGCTCGTCCCACAG
CAGCTGAAATGCTTAAGCACAAATTCATTGAAAGGTGCAAATGTGGAGCT
ACTGCAATGTTGCCAAAGATTGAAAAGGCAAGGCAAATTAGGGCCTCAAT
GGCTCAACAAGCACAAAATATTCTCTCAGACGAACCAGAAGTCAATGCAA
CAATGGGTCTGAAGTTGAATGAGGATTACGGAGATACCGTGCCATCAAAG
CCTCAGGTTCAAGTGACAAATGAAGTGCTTGCAACTAGTACTTTGAAAAA
GCAACATACGTTGGAGGATATGGAAGAAGGTGACTTTGGGACTGTTGTAG
TTCATGAGACTGATAAAACAATATCCAAGACTCAATGTTCCAATATTAAA
GAATCTTCAACTCTTCCTGGACATACTGAAATTAGTGGCACTGGCGGCAA
ATTGGCTGATGTCAGGGTGGACGGTGCAGCAGGTGTTGCTTTAAACAATA
AATTGGTTGGTGAATCACATCATCTTACACATACAATACAACCTTCTTCT
GCTGAAAATCTCAAGACAAAAATTTCTCAAGGACAGATTGGTAGTGGCAG
GGATACCGGCAGTGGCGCATTGAAGAGTGAACAGTCAGCAGAAAGCTTTT
GCTTTGCAAGACAGCTTTGGTCATATATGCAGCT
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