FC932175

Overview
NameFC932175
Unique NameFC932175
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932175_ssr211 microsatellite FC932175_ssr211:211..222. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15483 contig Ccv1_Contig15483:72..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932175 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 2
Query:  479 GQKRGF--SGRGG-PSPDLADGSSFAKLFVGSVPKTAREEDIRPLFEEHGNVIEVALIRIRR 655
            GQKRG+  S  G     D++D SS  KLFVGSVP+TA EE+IRP FE+HGNV+EVALI+ +R
Sbjct:   95 GQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKR 156          
The following BLAST results are available for this feature:
BLAST of FC932175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FCA_ARATH5.996e-1261.29Flowering time control protein FCA OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC34205D10EF PostHarveN Citrus clementina cDNA clone C34205D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932175 ID=FC932175; Name=FC932175; organism=Citrus clementina; type=EST; length=711bp
GGGTTTTCTCTAAATTCTAAAATCTGAATTCTAGGGTTAGGGTTTTAACT
ATCAGTCAGCAAAGCTGGAGAGGCAAAGAGGAGACCGTTATTATGGGCCC
AACAGCAACTACACCAGCAGCTTCAACAACAATCAAGACTCTCACTATAA
CAACAACCGTCACAACCGTCCCTCTCGCTTCACCGACGGTCCTTTAACAA
ACCGCTACAGCAACAACAACAACAGCGGCAACAGTAGTTATCAAGATTCT
TTTCAATTTAATCGTTGCCGTAGTCCGAACGACTTTCATGTTGACGGGGG
TGGTGCGGTTGGAGGGGCAGATGGGGGGCACCGCCCGTTTGATAGCCCGC
CACGTCGGGCGCCAGGTGGAGTCGGAGGAGGGTTCAGGCCAATGGGTGGA
GGCTTTAGGCCGATGTCCGGGCCCAGGTCGGGGATGAATTATCCTTTGCC
ACAGTCGCTGCCTGTTCCGCAACTTTCAGGACAGAAACGTGGATTTTCCG
GCCGAGGAGGGCCTTCTCCTGATCTTGCGGATGGCAGCAGTTTTGCCAAG
CTATTTGTAGGGTCTGTTCCGAAGACAGCCAGAGAAGAGGATATTCGTCC
CTTGTTTGAAGAACATGGAAATGTGATTGAGGTGGCTTTGATTAGGATAA
GAAGACAGGACACACNAGGTTCCCCTGAGAGGCTGATGGGAGCAACTAGC
TCATCTTCATC
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