FC932178

Overview
NameFC932178
Unique NameFC932178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15462 contig Ccv1_Contig15462:1..664. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_ANAVT (Tryptophan synthase alpha chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.161e-45
Identity = 89/148 (60.14%), Postives = 109/148 (73.65%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 657
            +++ F  LK+  + ALIP+ITAGD DL TTA ALK+LDS G+DIIELG+PYSDPLADGPVIQAAATR+L  GT   ++L MLK   P +  PI LFTYYN IL RG+DNF+  V   G+ GLVVPD+PLEE   L K A +  I+L+L
Sbjct:    4 ISDRFETLKQNQECALIPFITAGDPDLETTAAALKILDSNGADIIELGIPYSDPLADGPVIQAAATRALQNGTKLESVLEMLKVTTPSLQAPIVLFTYYNSILHRGIDNFLEQVAAAGVAGLVVPDLPLEEAAGLLKPATERGIDLIL 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_ACAM1 (Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) GN=trpA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.341e-44
Identity = 86/148 (58.11%), Postives = 115/148 (77.70%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 657
            +++ F +L+ +G+ ALIP++TAGD DL+TTA AL+ LD+ G+D+IELGVPYSDPLADGPVIQAAATR+L RGT  + +L M+ E+ P+I  PI LFTYYNPI  RGV  F+  +   G+RGLVVPD+PLEE+E+L ++A    IE+ L
Sbjct:    4 VSDCFAQLRDRGQCALIPFLTAGDPDLATTASALRQLDASGADLIELGVPYSDPLADGPVIQAAATRALQRGTRLDQVLEMVTELSPEIRAPIILFTYYNPIYHRGVAEFLQQIAKAGVRGLVVPDLPLEESENLLQQAADLGIEVTL 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_CYAP8 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801) GN=trpA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.812e-44
Identity = 88/148 (59.46%), Postives = 113/148 (76.35%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 657
            +++ F  L+ + + ALIP+ITAGD DL TTA+AL+LLD+ G+D+IELGVPYSDPLADGPVIQAAATR+L RG     +L ++KEV P+I  PI LFTYYNPI  RGV+ F+  V+  G++GLVVPD+PLEE ESL K A +  I + L
Sbjct:    4 VSDCFQSLRDRRQCALIPFITAGDPDLETTAKALRLLDASGADLIELGVPYSDPLADGPVIQAAATRALGRGVKLEDVLGVVKEVSPEIKAPIILFTYYNPIFYRGVEAFLQQVKAAGVQGLVVPDLPLEEAESLLKPAHEVGIAVTL 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_MICAN (Tryptophan synthase alpha chain OS=Microcystis aeruginosa (strain NIES-843) GN=trpA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.162e-43
Identity = 85/148 (57.43%), Postives = 109/148 (73.65%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 657
            + E F  L+ QG  ALIP+ITAGD DLSTTA+AL++LD  G+D+IELGVPYSDPLADGPVIQ+AATR+L RG     +L ++K    ++  PI LFTYYNPI  RG+D F+  ++  G+ GLVVPD+PLEE ESL + A    IE++L
Sbjct:    4 VTECFRSLRSQGNCALIPFITAGDPDLSTTAQALRILDRAGADLIELGVPYSDPLADGPVIQSAATRALNRGVKLEDVLEIVKNAQGEVKAPIILFTYYNPIYHRGIDVFLDQIKAAGVSGLVVPDLPLEEAESLLQPAAAKGIEVIL 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SYNP2 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=trpA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.532e-43
Identity = 82/148 (55.41%), Postives = 113/148 (76.35%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 657
            ++E F  LK+ G+ ALIP+ITAGD DL TT +ALK+LD+ G+D IELGVPYSDPLADGP IQAAATR+L+RG     +L++++ V  Q++ PI LFTYYNPI  RG+D FM+ V   G++GLV+PD+PLEE++ +   A  + ++L+L
Sbjct:    4 VSERFRSLKQAGQCALIPFITAGDPDLETTEQALKILDAAGADFIELGVPYSDPLADGPTIQAAATRALSRGVTLEQVLAIVQRVHGQLTAPIILFTYYNPIFYRGIDAFMAQVAAAGVKGLVIPDLPLEESQMVLDAATSHGLDLIL 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SYNY3 (Tryptophan synthase alpha chain OS=Synechocystis sp. (strain PCC 6803) GN=trpA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.837e-43
Identity = 81/148 (54.73%), Postives = 116/148 (78.38%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 657
            +A  F  L+++G+ ALIP++TAGD DL+TTAEAL++LD  G+D+IELGVPYSDPLADGPVIQAAATR+L +G   + +L++++EV   I+ PI LFTYYNPI  +GV+ F+  ++  G++GLVVPD+PLEE++ L +   +  +EL+L
Sbjct:    4 VAACFNALRQRGECALIPFLTAGDPDLATTAEALRILDRAGADLIELGVPYSDPLADGPVIQAAATRALQKGVKLDDVLAIVREVHQDIAAPIILFTYYNPIFYQGVEVFLDKIKAAGVKGLVVPDLPLEESDRLLEATAERGLELIL 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_TRIEI (Tryptophan synthase alpha chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.285e-42
Identity = 87/151 (57.62%), Postives = 114/151 (75.50%), Query Frame = 1
Query:  208 VGLAETFTRLKKQG-KVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 657
            + +++ F  L+    + ALIP+ITAGD DL TTA+AL++LD  G+++IELGVPYSDPLADGPVIQAAATRSL RGT   ++L +++ V P++  PI LFTYYNPIL RGV+NF+  + D+G RGLVVPD+PLEE + L + A    IEL L
Sbjct:    2 ISVSDCFESLRNNSSQCALIPFITAGDPDLETTAKALEVLDRSGANMIELGVPYSDPLADGPVIQAAATRSLNRGTTLESVLEVVQTVSPKLRSPIILFTYYNPILYRGVENFLKKIYDVGARGLVVPDLPLEEADILLEPAKDIGIELTL 152          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_MAIZE (Indole-3-glycerol phosphate lyase, chloroplastic OS=Zea mays GN=BX1 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.376e-42
Identity = 80/150 (53.33%), Postives = 108/150 (72.00%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFT 663
            +++T   L  +GK A IPYITAGD DL+TTAEAL+LLD CG+D+IELGVP SDP  DGP+IQA+  R+LA GT  +A+L ML+EV P++SCP+ L +YY PI+ R     ++ +++ G+ GL+VPD+P     SL  EA  N +ELVL T
Sbjct:   90 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRS----LAEMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLT 235          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SYNP6 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=trpA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.423e-41
Identity = 83/148 (56.08%), Postives = 109/148 (73.65%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 657
            +++ F  L+ QG+ ALIP++TAGD DL TT +AL  LD  G+D+IELGVPYSDPLADGPVIQAAATR+L  GT  + +L++LK+V  QI  PI LFTY NPIL RG + F+  +   G  GLVVPD+PLEE++ L + A +  I+L+L
Sbjct:    4 ISDCFAALRSQGRCALIPFLTAGDPDLETTRQALLALDREGADLIELGVPYSDPLADGPVIQAAATRALQAGTRLDDVLALLKDVRSQIKAPIVLFTYCNPILNRGFEAFLDQIAAAGANGLVVPDLPLEESQRLSEVAAERGIDLIL 151          
BLAST of FC932178 vs. ExPASy Swiss-Prot
Match: TRPA_SYNE7 (Tryptophan synthase alpha chain OS=Synechococcus elongatus (strain PCC 7942) GN=trpA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.423e-41
Identity = 83/148 (56.08%), Postives = 109/148 (73.65%), Query Frame = 1
Query:  214 LAETFTRLKKQGKVALIPYITAGDSDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVL 657
            +++ F  L+ QG+ ALIP++TAGD DL TT +AL  LD  G+D+IELGVPYSDPLADGPVIQAAATR+L  GT  + +L++LK+V  QI  PI LFTY NPIL RG + F+  +   G  GLVVPD+PLEE++ L + A +  I+L+L
Sbjct:    4 ISDCFAALRSQGRCALIPFLTAGDPDLETTRQALLALDREGADLIELGVPYSDPLADGPVIQAAATRALQAGTRLDDVLALLKDVRSQIKAPIVLFTYCNPILNRGFEAFLDQIAAAGANGLVVPDLPLEESQRLSEVAAERGIDLIL 151          
The following BLAST results are available for this feature:
BLAST of FC932178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPA_ANAVT6.161e-4560.14Tryptophan synthase alpha chain OS=Anabaena variab... [more]
TRPA_ACAM12.341e-4458.11Tryptophan synthase alpha chain OS=Acaryochloris m... [more]
TRPA_CYAP86.812e-4459.46Tryptophan synthase alpha chain OS=Cyanothece sp. ... [more]
TRPA_MICAN1.162e-4357.43Tryptophan synthase alpha chain OS=Microcystis aer... [more]
TRPA_SYNP27.532e-4355.41Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_SYNY39.837e-4354.73Tryptophan synthase alpha chain OS=Synechocystis s... [more]
TRPA_TRIEI1.285e-4257.62Tryptophan synthase alpha chain OS=Trichodesmium e... [more]
TRPA_MAIZE6.376e-4253.33Indole-3-glycerol phosphate lyase, chloroplastic O... [more]
TRPA_SYNP62.423e-4156.08Tryptophan synthase alpha chain OS=Synechococcus s... [more]
TRPA_SYNE72.423e-4156.08Tryptophan synthase alpha chain OS=Synechococcus e... [more]

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Properties
Property NameValue
Genbank descriptionC34205E01EF PostHarveN Citrus clementina cDNA clone C34205E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932178 ID=FC932178; Name=FC932178; organism=Citrus clementina; type=EST; length=664bp
GACCGATCAGCCATATCAAACAATCACTTACAGCCGCCTCTTTTTCTTTG
CCAAACACTGTCTGAAATGGCTGCGCTGCAAGCAACAACTAACTTCGTCC
ATCTCAAGAACCCACATGCTCATTATCTCCCTCGGCTCCCCTGTCACAAA
TCTACTCTTTCACTAAAAAGATTCACTCCCATGGCTGCTCTCACTGCATC
TCCCACTGTTGGTCTCGCTGAAACATTCACCCGATTGAAGAAGCAAGGCA
AAGTGGCCCTTATTCCATACATCACTGCTGGTGATTCTGACCTTTCAACC
ACCGCAGAAGCGTTGAAGTTGCTTGACTCTTGTGGATCAGACATAATTGA
ACTGGGTGTTCCATATTCTGATCCTTTAGCAGATGGTCCAGTCATCCAGG
CTGCGGCTACACGATCTTTAGCAAGAGGAACCAACTTCAATGCAATTCTT
TCTATGTTGAAGGAGGTGGTTCCTCAAATATCTTGTCCAATTGCTTTATT
TACATATTACAACCCAATTCTGAAGCGAGGAGTTGATAATTTCATGTCCA
CAGTAAGAGACATTGGCATACGTGGGCTTGTGGTTCCAGATGTCCCTCTG
GAGGAGACTGAATCTTTACAGAAGGAAGCCATGAAAAATAAGATTGAGCT
GGTACTTTTTACAA
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