FC932181

Overview
NameFC932181
Unique NameFC932181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15332 contig Ccv1_Contig15332:74..767. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.062e-82
Identity = 153/173 (88.44%), Postives = 163/173 (94.22%), Query Frame = 1
Query:  175 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKIDA 693
            S IAKDVTELIG TPLVYLNR+VDGCVAR+AAKLEMM+PCSSVKDRIGYSMI+DAE KGLI PGESVLIEPTSGNTGIGLAF+AAAKGYRLII MPASMSLERR +L AFGAELVLTDPARGMKGAVQKAEEI+ KTPNSY+LQQFENPANPKIHYETTG EI +G+GGKIDA
Sbjct:    6 STIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELVLTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWRGSGGKIDA 178          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.463e-81
Identity = 148/170 (87.06%), Postives = 160/170 (94.12%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            IAKDVTELIGKTPLVYLN + DGCVAR+AAKLE M+PCSSVKDRIG+SMI DAE+ GLI PGESVLIEPTSGNTGIGLAF+AAAKGY+LIITMPASMSLERR +L AFGAEL+LTDPA+GMKGAVQKAEEIRDKTPNSY+LQQFENPANPK+HYETTG EI KGTGGKID
Sbjct:    8 IAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELILTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKVHYETTGPEIWKGTGGKID 177          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.178e-79
Identity = 143/171 (83.63%), Postives = 159/171 (92.98%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKIDA 693
            IAKDVTELIG TPLVYLN +VDGCVAR+AAKLE M+PCSSVKDRIGYSMI DAEEKGLI+PGESVLIEPTSGNTG+GLAFMAAAKGY+LIITMP+SMSLERR++L  F +ELVLTDPA+GMKGA+ KAEEI+ KTPNSY+LQQFENPANPKIHYETTG EI KG+ GK+DA
Sbjct:    8 IAKDVTELIGNTPLVYLNNVVDGCVARVAAKLESMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERRIILRGFRSELVLTDPAKGMKGAISKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWKGSNGKVDA 178          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 2.708e-78
Identity = 143/172 (83.14%), Postives = 158/172 (91.86%), Query Frame = 1
Query:  175 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMM+PCSSVKDRIG+SMI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS ERR++LLAFG ELVLTDPA+GMKGA+ KAEEI  KTPN Y+LQQFENPANPKIHYETTG EI KGTGGKID
Sbjct:    3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKID 174          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 4.619e-78
Identity = 142/170 (83.53%), Postives = 156/170 (91.76%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            IAKDVTELIG TPLVYLNR+ DGCV R+AAKLE M+PCSSVKDRIGYSMI DAEEKGLI PG+SVLIEPTSGNTGIGLAFMAAAKGYRL++TMPASMS+ERR++L AFGAEL+LTDP  GMKGAVQKAEE+  KT NS++LQQFENPANPKIHYETTG EI KGTGGK+D
Sbjct:    5 IAKDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTNNSFILQQFENPANPKIHYETTGPEIWKGTGGKVD 174          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 7.878e-78
Identity = 142/172 (82.56%), Postives = 158/172 (91.86%), Query Frame = 1
Query:  175 SVIAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            S IAKDVTELIG TPLVYLN + +GCV R+AAKLEMM+PCSSVKDRIG+SMI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS+ERR++LLAFG ELVLTDPA+GMKGA+ KAEEI  KTPN Y+LQQFENPANPKIHYETTG EI KGT GKID
Sbjct:    3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTDGKID 174          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.029e-77
Identity = 142/170 (83.53%), Postives = 155/170 (91.18%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            IAKDVTELIG TPLVYLN++ DGCV R+AAKLE M+PCSSVKDRIGYSMI DAEEKG I PG+SVLIEPTSGNTGIGLAFMAAAKGYRL++TMPASMS+ERR++L AFGAEL+LTDP  GMKGAVQKAEE+  KTPNSY+LQQFEN ANPKIHYETTG EI KGTGGKID
Sbjct:    9 IAKDVTELIGNTPLVYLNKVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGFIVPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTPNSYILQQFENAANPKIHYETTGPEIWKGTGGKID 178          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.670e-77
Identity = 140/170 (82.35%), Postives = 156/170 (91.76%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            IA DVTELIG TPLVYLN + +GCV R+AAKLEMM+PCSSVKDRIG+SMI+DAE+KGLI+PGESVLIEPTSGNTG+GLAF AAAKGY+LIITMPASMS+ERR++LLAFG ELVLTDPA+GMKGA+ KAEEI  KTPN Y+LQQFENPANPKIHYETTG EI KGT GKID
Sbjct:    7 IANDVTELIGNTPLVYLNSVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTEGKID 176          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 9.631e-76
Identity = 141/170 (82.94%), Postives = 152/170 (89.41%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            IAKDVTELIG TPLVYLN++ DGCV R  AKLE M+PCSSVKDRIGYSMI DAEEKGLI PG SVLIEPTSGNTGIGLAFMAAAKGY+L +TMPASMS+ERR++L AFGAELVLTDP  GMKGAV+KAEEI+ KTPNSY+LQQFENPANPKIHYETTG EI K T GKID
Sbjct:    8 IAKDVTELIGNTPLVYLNKVTDGCVGRSRAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGVSVLIEPTSGNTGIGLAFMAAAKGYKLTLTMPASMSMERRIILKAFGAELVLTDPLLGMKGAVKKAEEIQAKTPNSYILQQFENPANPKIHYETTGPEIWKATAGKID 177          
BLAST of FC932181 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 2.146e-75
Identity = 138/170 (81.18%), Postives = 154/170 (90.59%), Query Frame = 1
Query:  181 IAKDVTELIGKTPLVYLNRIVDGCVARIAAKLEMMKPCSSVKDRIGYSMIADAEEKGLIRPGESVLIEPTSGNTGIGLAFMAAAKGYRLIITMPASMSLERRMVLLAFGAELVLTDPARGMKGAVQKAEEIRDKTPNSYVLQQFENPANPKIHYETTGTEIRKGTGGKID 690
            IA DVT LIG TPLVYLN++VDGC A+IAAKLE+M+PCSSVKDRIGYSMI DAEEKGLI PG+SVLIEPTSGNTGIGLAFMAAAKGY+LI+TMPASMS+ERR++L AFGAELVLTDP  GMKGA+QKA+E+  K PNSY+LQQFENPANPKIHYETTG EI K T GK+D
Sbjct:    8 IASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLTDPLLGMKGAIQKADELAAKMPNSYILQQFENPANPKIHYETTGPEIWKATAGKVD 177          
The following BLAST results are available for this feature:
BLAST of FC932181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSK_CITLA1.062e-8288.44Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK_SPIOL4.463e-8187.06Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK_SOLTU4.178e-7983.63Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK1_ARATH2.708e-7883.14Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK1_ORYSJ4.619e-7883.53Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK1_BRAJU7.878e-7882.56Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK_WHEAT1.029e-7783.53Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]
CYSK2_BRAJU6.670e-7782.35Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK_MAIZE9.631e-7682.94Cysteine synthase OS=Zea mays PE=1 SV=2[more]
CYSK2_ORYSJ2.146e-7581.18Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]

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Properties
Property NameValue
Genbank descriptionC34205E04EF PostHarveN Citrus clementina cDNA clone C34205E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932181 ID=FC932181; Name=FC932181; organism=Citrus clementina; type=EST; length=694bp
GATATAAGCAAAATCATCGTAACGCATAAACATAATTATTATCAGGAGAT
TTATTTGTTTTTCAATTTTCTACTGTTTTCCAGCTGCCTTGACATTGTTT
ACGATTCTTCCCAGAGAAAGCTTTCACGTTCGCTTGTAACTTGAAAAAAA
GAAAAAAAAATGGTGGAGGAGAAGTCCGTGATTGCGAAAGATGTCACTGA
ATTGATTGGTAAAACACCATTGGTGTATCTCAACCGCATTGTGGATGGTT
GCGTTGCTAGAATTGCTGCCAAGCTGGAGATGATGAAACCCTGCTCTAGC
GTCAAAGATAGAATTGGATACAGTATGATCGCTGATGCAGAGGAGAAGGG
TCTCATTAGACCAGGCGAGAGTGTCCTGATTGAGCCTACCAGCGGTAATA
CTGGCATAGGGTTGGCATTCATGGCAGCTGCTAAGGGTTACAGACTTATA
ATTACCATGCCTGCTTCAATGAGTCTTGAAAGAAGAATGGTTCTCCTAGC
TTTTGGAGCTGAGCTTGTGCTCACTGATCCTGCCAGGGGCATGAAGGGAG
CTGTTCAGAAGGCAGAAGAGATAAGGGACAAGACACCGAATTCCTATGTC
CTTCAGCAGTTTGAAAACCCAGCAAACCCAAAGATCCACTACGAGACTAC
CGGAACAGAGATCCGGAAAGGCACCGGTGGTAAGATTGATGCCC
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