FC932183

Overview
NameFC932183
Unique NameFC932183
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932183_ssr69 microsatellite FC932183_ssr69:69..80. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15465 contig Ccv1_Contig15465:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932183 vs. ExPASy Swiss-Prot
Match: CKAP5_MOUSE (Cytoskeleton-associated protein 5 OS=Mus musculus GN=Ckap5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 54/176 (30.68%), Postives = 85/176 (48.30%), Query Frame = 1
Query:  178 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDTIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDXSDQNGRASSK 702
            P + +  HK WK R     +   +   I D K     +   L KK V DSNA VQ K L+A + Y++ A   AG+   EV   + +K     + K  E    + +++VE+E  +   + +               I+ + +ALSEFG+KII  K I+K+LP+LF+  D+  R  +K
Sbjct:   11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKYLGLIKKFVTDSNAVVQLKGLEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYVEIEKGESVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLPKLFESRDKAVRDEAK 185          
BLAST of FC932183 vs. ExPASy Swiss-Prot
Match: CKAP5_HUMAN (Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 52/176 (29.55%), Postives = 85/176 (48.30%), Query Frame = 1
Query:  178 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDTIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDXSDQNGRASSK 702
            P + +  HK WK R     +   +   I D K     +   L KK V DSNA VQ K L+A + Y++ A   AG+   EV   + +K     + K  E    + ++++E+E  +   + +               I+ + +ALSEFG+KII  K I+K+LP+LF+  ++  R  +K
Sbjct:   11 PVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGIEICLMYIEIEKGEAVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAK 185          
BLAST of FC932183 vs. ExPASy Swiss-Prot
Match: MTAA_DICDI (Centrosomal protein 224 OS=Dictyostelium discoideum GN=mtaA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 48/170 (28.24%), Postives = 74/170 (43.53%), Query Frame = 1
Query:  184 EDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDTIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDXSDQNGR 690
            EDR+ HKNWK R     +L     +  +       E GP FKK +AD N   Q++AL+ L A++   D    ++A      +  K     RP+  EK     +L +E ++ +  ++ +               +  + QAL  FG K IP K ILK     F+  D+  R
Sbjct:   12 EDRINHKNWKWRVSGLEELTTKFRNSIEGSGPLFNEWGPQFKKILADINPMSQERALEPLSAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEKTIECLLLTIEADSAEPVVEALLKGTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQFSPWFENRDKGIR 180          
BLAST of FC932183 vs. ExPASy Swiss-Prot
Match: ALP14_SCHPO (Spindle pole body component alp14 OS=Schizosaccharomyces pombe GN=alp14 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 51/176 (28.98%), Postives = 79/176 (44.89%), Query Frame = 1
Query:  178 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIR---ELGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCD-TIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKMLPELFDXSDQNGR 690
            P E R++HK WKVR  A  + +       D  DN          L+K  + DSN   Q+    A +AY + +D      A+E+   +I+ KCLT  R  T E A    ML VE ++    ++ +               +  +   + +FGAK+IP K I+  +  LF  +D+N R
Sbjct:   13 PLESRIVHKVWKVRLSAYEECSKSFSLSADGSDNCFELWNNQSELWKSVLTDSNVAAQEAGTAAFVAYCRFSDPSHLLKAREISVLSISEKCLTSPRAGTRENALEALMLLVEADSAAPVIESIIPSLSARSPKVIASNVAAIASLVEQFGAKVIPSKMIIPHISNLFGHADKNVR 188          
The following BLAST results are available for this feature:
BLAST of FC932183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CKAP5_MOUSE2.414e-1330.68Cytoskeleton-associated protein 5 OS=Mus musculus ... [more]
CKAP5_HUMAN7.025e-1329.55Cytoskeleton-associated protein 5 OS=Homo sapiens ... [more]
MTAA_DICDI7.767e-1228.24Centrosomal protein 224 OS=Dictyostelium discoideu... [more]
ALP14_SCHPO1.014e-1128.98Spindle pole body component alp14 OS=Schizosacchar... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34205E06EF PostHarveN Citrus clementina cDNA clone C34205E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932183 ID=FC932183; Name=FC932183; organism=Citrus clementina; type=EST; length=707bp
GTGGTTTCTCTCTCTTTCCGTCTCCTAGTGCCGGCACTCGCCGAGAAAAT
ATCAAAGAAAATTGAAAGAGAAAGAAAGAAAGCTTCAGTTAAATTTATTT
CGTTATTTGCGAGATTAACTTAGATCAAAGCGAAAATGTCCGAAGAAGAG
AAATTATTGAAAGAGGCGAAGAAATTACCGTGGGAAGATCGGTTACTGCA
CAAGAATTGGAAAGTTAGGAACGAGGCTAACATTGATTTGGCCGCTCTAT
GCGACTCCATTACTGATCCTAAGGACAATCGCATCAGAGAACTAGGTCCG
TTGTTTAAGAAGACTGTTGCGGATTCGAATGCGCCGGTACAAGATAAGGC
TCTTGATGCGTTGATTGCTTACTTAAAAGCAGCGGATGCGGATGCCGGAA
GATATGCCAAAGAAGTTTGTGATACAATTGCGGCAAAGTGCCTGACGGGG
AGACCGAAGACAGTGGAGAAGGCTCAGGCGGTGTTTATGCTTTGGGTTGA
ATTGGAGGCAGTTGATGTTTTTCTTGATGTAATGGAGAAAGCAATAAAGA
ACAAGGTTGCCAAAGCAGTTGTGCCTGCTATTGACGTCATGTTTCAAGCA
TTAAGTGAATTTGGAGCGAAAATTATACCTCCGAAGAGGATTCTGAAGAT
GCTTCCTGAGCTCTTTGACCNATCAGATCAAAATGGTCGTGCTTCCTCTA
AAGGACT
back to top