FC932184

Overview
NameFC932184
Unique NameFC932184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15083 contig Ccv1_Contig15083:150..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932184 vs. ExPASy Swiss-Prot
Match: NADC_RHORU (Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Rhodospirillum rubrum GN=nadC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 55/143 (38.46%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  295 PSHPT-----YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGNSTLTRAMAD-LAHP-ATILETRKTAP 702
            P+HP      + +   V+ ALAED G  GD+T  ATIP      A F+A++ GI+AG+  A   F  +D ++     L+DG  +  G    +V+G A +I+ AER  LNF+  +SG +T TR   D +AH  A +  TRKT P
Sbjct:    3 PNHPVAALSPFAIDEAVRRALAEDLGRAGDITSTATIPAATRAHARFVARQPGILAGLGCARSAFALLDDTVTFTTPLEDGAEIAAGQTVAEVAGAARTILAAERTALNFLGHLSGIATRTRRFGDAIAHTRARLTCTRKTTP 145          
BLAST of FC932184 vs. ExPASy Swiss-Prot
Match: NADC_PSEAE (Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Pseudomonas aeruginosa GN=nadC PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.167e-15
Identity = 52/143 (36.36%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  292 LPSHPTYDLKGV----VKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGNSTLTRAMADLAHPATI--LETRKTAP 702
            +P+    DL+G     V+ ALAED G  GD+T     P   E EA  + +E   IAG A  + +F +VDP + V W ++DG  V       ++ G A +++  ER  LNF+Q +SG +T ++  ADL     +  L+TRKT P
Sbjct:    1 MPNLTLADLQGEIQANVRTALAEDVGG-GDLTAQLIDP-QREAEARVITREHATIAGRAWVDEVFRQVDPRVLVTWQVEDGQRVEPNQMLFQLKGPARALLTGERSALNFLQLLSGTATRSQHYADLVAGTAVKLLDTRKTLP 141          
BLAST of FC932184 vs. ExPASy Swiss-Prot
Match: NADC_SYNY3 (Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Synechocystis sp. (strain PCC 6803) GN=nadC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 46/125 (36.80%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  340 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGNSTLTR----AMADLAHPATILETRKTAP 702
            LAED G RGD +    + L    +A ++AKE+G+IAG+ +A  IF  +DPS++ +    +G  V        ++G   S++  ERV LN +  +SG +T+TR    A+AD  +P   ++TRKT P
Sbjct:   29 LAEDIG-RGDWSTQG-LGLQHRGQARWVAKENGVIAGLPMAARIFQLLDPSMEFQVLAGEGQAVTASTVVATMAGNLGSLLTGERVALNLVMGLSGIATMTRQYVQAIAD--YPTRFVDTRKTTP 149          
BLAST of FC932184 vs. ExPASy Swiss-Prot
Match: NADC_BACSU (Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Bacillus subtilis GN=nadC PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 1
Query:  316 LKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGNSTLTRAMADLA--HPATILETRKTAP 702
            LK ++     ED G  GD+T  +    +   EA  +AK +GI AG A+ +  F  +D +++     KDGD +HKG    ++ G A +++  ERVVLN +QR+SG +T+TR            I +TRKT P
Sbjct:    6 LKKLLNHFFLEDIGT-GDLTSQSIFG-EQSCEAEIVAKSEGIFAGAAIIKEGFSLLDENVQSILHKKDGDMLHKGEVIAELHGPAAALLSGERVVLNLIQRLSGIATMTREAVRCLDDEQIKICDTRKTTP 134          
BLAST of FC932184 vs. ExPASy Swiss-Prot
Match: NADC_METTH (Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Methanobacterium thermoautotrophicum GN=nadC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 45/130 (34.62%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  325 VVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSGNSTLTRAMADLAHPAT----ILETRKTAP 702
            +++  +  D G   D+T  A I     V A  +++E+G++AG+ +AEM+  E   S+ + W   DGD +  G +   + G A  I++ ER +LN M +MSG +TLTR+M   A        I  TRKT P
Sbjct:    4 IIREMIRADVGFE-DITTEALIDRGTRVVADIVSREEGVVAGVEVAEMMAREFSISI-IRWK-DDGDPLSGGERVLTLEGDAMDILMVERTMLNLMMKMSGIATLTRSMLQRARAVNEGIRIAATRKTTP 130          
BLAST of FC932184 vs. ExPASy Swiss-Prot
Match: NADC_SALTY (Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Salmonella typhimurium GN=nadC PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  313 DLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV-DPSLKVEWSLKDGDHVHKGLQFGKVSGRAHSIVIAERVVLNFMQRMSG-NSTLTRAMADLAHPAT-ILETRKTAP 702
            D+   V  AL ED G   D G+      +P D +  A  + +EDG+  G    E +F ++    +++ W + DGD +H      +++G A  ++  ER  LNF+Q +SG  S + R +  LA   T +L+TRKT P
Sbjct:   22 DIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRLTWHVDDGDAIHANQTVFELNGPARVLLTGERTALNFVQTLSGVASEVRRYVGLLAGTQTQLLDTRKTLP 157          
The following BLAST results are available for this feature:
BLAST of FC932184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NADC_RHORU3.282e-1838.46Probable nicotinate-nucleotide pyrophosphorylase [... [more]
NADC_PSEAE1.167e-1536.36Nicotinate-nucleotide pyrophosphorylase [carboxyla... [more]
NADC_SYNY35.996e-1236.80Probable nicotinate-nucleotide pyrophosphorylase [... [more]
NADC_BACSU7.830e-1235.88Probable nicotinate-nucleotide pyrophosphorylase [... [more]
NADC_METTH1.744e-1134.62Probable nicotinate-nucleotide pyrophosphorylase [... [more]
NADC_SALTY5.076e-1132.35Nicotinate-nucleotide pyrophosphorylase [carboxyla... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34205E07EF PostHarveN Citrus clementina cDNA clone C34205E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932184 ID=FC932184; Name=FC932184; organism=Citrus clementina; type=EST; length=710bp
CCGGCCAGGGGTTTTGCTAATGCTGGATTTCTAAGAAACCACCCCCGCTC
AGTCCTCTACAAAAAAAATTCTCAACTTCCCGATTAAATTCTCTGTCATT
CCTGTGGACAGGTTATAATTGAAGCTCTGTTGTCTGCACACTTGATAGGA
GCTTCAGAGAGAGCATTAATGCCAGGCATTCTTTCTATTTCTACATTGGT
TTGGCCTCACCTTTGTACTAATTCAAGGCAGGTTGTTAAAATGTCGGCTA
CTGGAATCAGAAAACCTGGATTTGAGTCCCCGGCAATAAAGCTTCCTTCA
CATCCTACCTATGATTTAAAGGGTGTTGTCAAACTAGCCCTTGCAGAAGA
TGCTGGGGATCGAGGGGATGTAACTTGTATGGCTACCATTCCACTTGACA
TGGAAGTGGAAGCCCATTTCCTGGCAAAGGAAGATGGTATCATTGCTGGG
ATTGCACTGGCAGAGATGATATTTCACGAGGTTGATCCTTCTCTGAAGGT
GGAATGGTCTCTAAAGGATGGAGATCATGTTCATAAGGGATTGCAGTTTG
GCAAAGTTTCAGGGCGGGCACACAGCATTGTTATTGCTGAAAGAGTAGTG
CTAAACTTTATGCAGCGGATGAGTGGAAATAGCACTCTAACTAGGGCAAT
GGCAGATCTTGCACATCCAGCAACCATTTTAGAGACGAGAAAGACTGCTC
CAACTTTCCG
back to top