FC932190

Overview
NameFC932190
Unique NameFC932190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15468 contig Ccv1_Contig15468:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CML13_ARATH (Probable calcium-binding protein CML13 OS=Arabidopsis thaliana GN=CML13 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.077e-63
Identity = 118/135 (87.41%), Postives = 128/135 (94.81%), Query Frame = 3
Query:    3 MKEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            MKEAF LFDTDG GKIAPSELGILMRSLGGNPTQAQLKSII+ E L++PFDF RFLDLMAKH+K EPFDRQLRDAFKVLDK+ TGFV+V+DLRHILTSIGEKLEP+EFDEWI+EVDVGSDGKI+YEDFIARMVAK
Sbjct:   14 MKEAFMLFDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIIASENLSSPFDFNRFLDLMAKHLKTEPFDRQLRDAFKVLDKEGTGFVAVADLRHILTSIGEKLEPNEFDEWIKEVDVGSDGKIRYEDFIARMVAK 148          
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CML14_ARATH (Probable calcium-binding protein CML14 OS=Arabidopsis thaliana GN=CML14 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.995e-62
Identity = 116/135 (85.93%), Postives = 128/135 (94.81%), Query Frame = 3
Query:    3 MKEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            MKEAF LFDTDG GKIAPSELGILMRSLGGNPT++QLKSII+ E L++PFDF RFLDLMAKH+K EPFDRQLRDAFKVLDK+ TGFV+V+DLRHILTSIGEKL+PSEFDEWI+EVDVGSDGKI+YEDFIARMVAK
Sbjct:   14 MKEAFMLFDTDGDGKIAPSELGILMRSLGGNPTESQLKSIITTENLSSPFDFNRFLDLMAKHLKTEPFDRQLRDAFKVLDKEGTGFVAVADLRHILTSIGEKLQPSEFDEWIKEVDVGSDGKIRYEDFIARMVAK 148          
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CML7_ORYSJ (Probable calcium-binding protein CML7 OS=Oryza sativa subsp. japonica GN=CML7 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.084e-58
Identity = 106/135 (78.52%), Postives = 122/135 (90.37%), Query Frame = 3
Query:    3 MKEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            M+EAF+LFDTDG G+IAPSELG+LMRSLGGNPTQAQL+ I ++EKLTAPFDFPRFLDLM  H++PEPFDR LRDAF+VLDKD +G VSV+DLRH+LTSIGEKLEP EFDEWIREVDV  DG I+Y+DFI R+VAK
Sbjct:   14 MREAFSLFDTDGDGRIAPSELGVLMRSLGGNPTQAQLRDIAAQEKLTAPFDFPRFLDLMRAHLRPEPFDRPLRDAFRVLDKDASGTVSVADLRHVLTSIGEKLEPHEFDEWIREVDVAPDGTIRYDDFIRRIVAK 148          
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM1_SOLTU (Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.546e-35
Identity = 71/136 (52.21%), Postives = 96/136 (70.59%), Query Frame = 3
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +ISE         DFP FL+LMA+ MK    + +L++AFKV DKD  GF+S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M+AK
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEADADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVRMMLAK 149          
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM_SOLLC (Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.631e-35
Identity = 71/136 (52.21%), Postives = 96/136 (70.59%), Query Frame = 3
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +ISE         DFP FL+LMA+ MK    + +L++AFKV DKD  GF+S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M+AK
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVRMMLAK 149          
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSJ (Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CAM2 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.032e-34
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = 3
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMAK MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149          
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSI (Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.032e-34
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = 3
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMAK MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149          
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM_MOUSC (Calmodulin OS=Mougeotia scalaris PE=2 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 1.347e-34
Identity = 70/136 (51.47%), Postives = 95/136 (69.85%), Query Frame = 3
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMA+ MK    + +L++AFKV DKD  G++S +D RH++T++GEKL   E DE IRE DV  DG++ YE+F+  M+AK
Sbjct:   14 KEAFSLFDKDGDGSITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGYISAADWRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVKMMMAK 149          
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM2_PETHY (Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.347e-34
Identity = 70/136 (51.47%), Postives = 96/136 (70.59%), Query Frame = 3
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +ISE         DFP FL+LMA+ MK    + +L++AFKV DKD  G++S +D+RH++T++GEKL   E DE IRE D+  DG++ YE+F+  M+AK
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGYISAADVRHVMTNLGEKLTDEEVDEMIREADMDGDGQVNYEEFVRMMLAK 149          
BLAST of FC932190 vs. ExPASy Swiss-Prot
Match: CALM6_ARATH (Calmodulin-6 OS=Arabidopsis thaliana GN=CAM6 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.760e-34
Identity = 71/136 (52.21%), Postives = 96/136 (70.59%), Query Frame = 3
Query:    6 KEAFTLFDTDGGGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 407
            KEAF+LFD DG G I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMA+ MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLSDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149          
The following BLAST results are available for this feature:
BLAST of FC932190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
CML13_ARATH3.077e-6387.41Probable calcium-binding protein CML13 OS=Arabidop... [more]
CML14_ARATH1.995e-6285.93Probable calcium-binding protein CML14 OS=Arabidop... [more]
CML7_ORYSJ5.084e-5878.52Probable calcium-binding protein CML7 OS=Oryza sat... [more]
CALM1_SOLTU3.546e-3552.21Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=... [more]
CALM_SOLLC4.631e-3552.21Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 S... [more]
CALM2_ORYSJ1.032e-3452.94Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CA... [more]
CALM2_ORYSI1.032e-3452.94Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2... [more]
CALM_MOUSC1.347e-3451.47Calmodulin OS=Mougeotia scalaris PE=2 SV=3[more]
CALM2_PETHY1.347e-3451.47Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2[more]
CALM6_ARATH1.760e-3452.21Calmodulin-6 OS=Arabidopsis thaliana GN=CAM6 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34205F01EF PostHarveN Citrus clementina cDNA clone C34205F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932190 ID=FC932190; Name=FC932190; organism=Citrus clementina; type=EST; length=682bp
GCATGAAGGAAGCCTTCACATTGTTCGACACAGACGGTGGCGGAAAGATC
GCGCCGTCTGAGCTAGGGATCCTAATGAGGTCACTTGGGGGAAACCCGAC
CCAGGCCCAGCTCAAATCCATAATCTCCGAGGAAAAACTAACGGCACCCT
TTGACTTCCCGCGGTTCCTTGACCTGATGGCCAAGCACATGAAACCTGAG
CCCTTCGATCGCCAGTTGCGTGACGCCTTCAAAGTGCTGGATAAAGATAA
CACCGGCTTCGTCTCCGTCTCCGATCTACGACACATTCTCACTTCTATTG
GGGAGAAGCTGGAGCCTTCCGAGTTTGATGAGTGGATCCGGGAAGTGGAT
GTCGGGTCCGACGGCAAGATCAAGTACGAGGATTTTATTGCCCGGATGGT
GGCCAAGTGACCTGTGATTGGATCTTCAACTTTAAGATATGATTAATGGG
TGTCTGTTTATTTTTAATGTTTTCTGCAATTAATGTTGAGTTTTGTGTAC
CTTTCTGTTTTAATGTGATGGATTTTGATGGTATTTCTTGAATTGTTGAA
AGTAATGCTGACCTTTTGTTAGGTATTTTTTTACATTCTGAACTTTGATG
TTATGTGTAATATATAATGTGTAGATGTTTCTTGAAATGAATTGGTTTAT
TAATGACAAANAAAAAAAAAAAAAAAAAAAAA
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