FC932191

Overview
NameFC932191
Unique NameFC932191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932191 vs. ExPASy Swiss-Prot
Match: SND1_DANRE (Staphylococcal nuclease domain-containing protein 1 OS=Danio rerio GN=snd1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.425e-15
Identity = 56/159 (35.22%), Postives = 83/159 (52.20%), Query Frame = 1
Query:    1 IWENYVE--GEEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLS--STPPLAQLCSLAYIKIPALED 462
            +W NY E   EEV+     + + +        EI  G  FY Q V    K+ ++ + +      + PV G+F P++GE  +A+F AD  W RA +     EKVES   K  VFYIDYGN+E++   +L  + P+ S  + PP A   + AYI++P  ED
Sbjct:  660 LWANYEEKPNEEVAQVTEAKERGRNTDPSTSLEITDGLHFYAQDVETGTKLENLMESMRGEIAAQPPVEGSFAPRRGEFCIAKF-ADGEWYRARV-----EKVESPA-KVHVFYIDYGNREVLSSTRLAALPPAFSTRTLPPQATEYAFAYIQVPQDED 811          
BLAST of FC932191 vs. ExPASy Swiss-Prot
Match: TDRD1_HUMAN (Tudor domain-containing protein 1 OS=Homo sapiens GN=TDRD1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   58 KQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGA-FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPA 453
            K+   +K  VTE    G FYVQ    + +  + Q  ASL    A V    + P KGE+ +A+++ D +WNRA+I N     V+    K  V YIDYGN+E++P N++  ++ ++   PP A  C +A + IPA
Sbjct:  261 KKTMEIKGTVTEFKHPGDFYVQLYSSEVLEYMNQLSASLKETYANVHEKDYIPVKGEVCIAKYTVDQTWNRAIIQN-----VDVQQKKAHVLYIDYGNEEIIPLNRIYHLNRNIDLFPPCAIKCFVANV-IPA 387          
BLAST of FC932191 vs. ExPASy Swiss-Prot
Match: SND1_RAT (Staphylococcal nuclease domain-containing protein 1 OS=Rattus norvegicus GN=Snd1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13
Identity = 56/159 (35.22%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    1 IWENYVEG--EEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKIPALED 462
            +W +Y E   EEV      + +      V VTEI     FYVQ V    ++  + + + S      PV GA+ P++GE  +A+F  D  W RA +     EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A   + A+I++P  ED
Sbjct:  656 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRSDISSHPPVEGAYAPRRGEFCIAKF-VDGEWYRARV-----EKVESPA-KVHVFYIDYGNREILPSTRLGALPPAFSTRVLPAQATEYAFAFIQVPQDED 807          
BLAST of FC932191 vs. ExPASy Swiss-Prot
Match: TDRD1_MOUSE (Tudor domain-containing protein 1 OS=Mus musculus GN=Tdrd1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.013e-13
Identity = 45/144 (31.25%), Postives = 74/144 (51.39%), Query Frame = 1
Query:   58 KQKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVI--GAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAA 483
            K+   +K  VTE      FY+Q    + + ++ Q   SL    A V+    + P KGE+ +A+++ D +WNRA++     + V+ +  K  V YIDYGN+E++P + + P+   L   PP A  C ++ +   A E   G  AA
Sbjct:  255 KKTMEIKGTVTEFKHPSNFYIQLYSSEVLENMNQLSTSLKETYANVVPEDGYLPVKGEVCVAKYTVDQTWNRAIV-----QAVDVLQRKAHVLYIDYGNEEMIPIDSVHPLSRGLDLFPPSAIKCCVSGVIPTAGEWSEGCVAA 393          
BLAST of FC932191 vs. ExPASy Swiss-Prot
Match: SND1_MOUSE (Staphylococcal nuclease domain-containing protein 1 OS=Mus musculus GN=Snd1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.013e-13
Identity = 54/159 (33.96%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    1 IWENYVEG--EEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKIPALED 462
            +W +Y E   EEV      + +      V VTEI     FYVQ V    ++  + + + +      PV G++ P++GE  +A+F  D  W RA +     EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A   + A+I++P  ED
Sbjct:  657 VWAHYEERPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDISSHPPVEGSYAPRRGEFCIAKF-VDGEWYRARV-----EKVESPA-KVHVFYIDYGNREILPSTRLGTLPPAFSTRVLPAQATEYAFAFIQVPQDED 808          
BLAST of FC932191 vs. ExPASy Swiss-Prot
Match: SND1_HUMAN (Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    1 IWENYVEG--EEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKIPALED 462
            +W +Y E   EEV      + +      V VTEI     FYVQ V    ++  + + + +      PV G++ P++GE  +A+F  D  W RA +     EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A   + A+I++P  +D
Sbjct:  657 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-VDGEWYRARV-----EKVESPA-KIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDD 808          
BLAST of FC932191 vs. ExPASy Swiss-Prot
Match: SND1_BOVIN (Staphylococcal nuclease domain-containing protein 1 OS=Bos taurus GN=SND1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    1 IWENYVEGEEVSNGAAVEGKQKEVL--KVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKIPALED 462
            +W +Y E         +E K++      V VTEI     FYVQ V    ++  + + + +      PV G++ P++GE  +A+F  D  W RA +     EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A   + A+I++P  ED
Sbjct:  657 VWAHYEEQPVEELMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-VDGEWYRARV-----EKVESPA-KVHVFYIDYGNREILPSTRLGTLPPAFSTRVLPAQATEYAFAFIQVPQDED 808          
BLAST of FC932191 vs. ExPASy Swiss-Prot
Match: SND1_PONAB (Staphylococcal nuclease domain-containing protein 1 OS=Pongo abelii GN=SND1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 53/159 (33.33%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    1 IWENYVEG--EEVSNGAAVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS--TPPLAQLCSLAYIKIPALED 462
            +W +Y E   EEV      + +      V VTEI     FYVQ V    ++  + + + +      PV G++ P++GE  +A+F  D  W RA +     EKVES   K  VFYIDYGN+E++P  +L  + P+ S+   P  A   + A+I++P  +D
Sbjct:  657 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-VDGEWYRARV-----EKVESPA-KIHVFYIDYGNREVLPSTRLGTLPPAFSTRVLPAQATEYAFAFIQVPQDDD 808          
The following BLAST results are available for this feature:
BLAST of FC932191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SND1_DANRE6.425e-1535.22Staphylococcal nuclease domain-containing protein ... [more]
TDRD1_HUMAN1.212e-1336.09Tudor domain-containing protein 1 OS=Homo sapiens ... [more]
SND1_RAT1.212e-1335.22Staphylococcal nuclease domain-containing protein ... [more]
TDRD1_MOUSE6.013e-1331.25Tudor domain-containing protein 1 OS=Mus musculus ... [more]
SND1_MOUSE6.013e-1333.96Staphylococcal nuclease domain-containing protein ... [more]
SND1_HUMAN7.854e-1333.33Staphylococcal nuclease domain-containing protein ... [more]
SND1_BOVIN7.854e-1333.33Staphylococcal nuclease domain-containing protein ... [more]
SND1_PONAB1.026e-1233.33Staphylococcal nuclease domain-containing protein ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34205F02EF PostHarveN Citrus clementina cDNA clone C34205F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932191 ID=FC932191; Name=FC932191; organism=Citrus clementina; type=EST; length=648bp
ATATGGGAGAATTATGTTGAAGGAGAGGAAGTGTCCAATGGTGCAGCTGT
AGAAGGCAAACAGAAAGAAGTGCTAAAGGTGGTGGTTACAGAAATTTTGG
GAGGTGGAAAATTCTATGTTCAGCAAGTTGGTGATCAGAAAGTTGCCTCA
GTTCAGCAACAACTTGCTTCTCTGAATCTCCAAGAAGCTCCTGTAATTGG
TGCTTTTAACCCTAAGAAGGGCGAAATTGTTCTTGCTCAATTTAGTGCAG
ATAATTCCTGGAATCGAGCTATGATTGTCAATGCACCTCGGGAGAAGGTT
GAATCTGTAAACGACAAATTTGAAGTATTCTATATTGATTATGGAAATCA
AGAGTTGGTTCCATACAATAAGCTGAGGCCTATTGATCCATCATTATCGT
CGACACCACCTCTTGCTCAGCTATGCAGCCTTGCCTACATCAAGATTCCT
GCCTTGGAAGATGAGTATGGTCCTGAAGCAGCTGAGTTCTTGAATGAACA
TACGTATAACAGTTCAAATGAATTTAGGGCCTTAGTGGAAGAAAGGGATT
CTTCTGGAGGAAAACTCAAGGGACAGGGAACTGGGACACTTCTTCATGTA
ACTCTGGTTGCTGTGGATGCTGAGATTAGCATAAATACTCTTATGGTT
back to top