FC932194

Overview
NameFC932194
Unique NameFC932194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig543 contig Ccv1_Contig543:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932194 vs. ExPASy Swiss-Prot
Match: PH1_ARATH (Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 5.522e-57
Identity = 103/145 (71.03%), Postives = 119/145 (82.07%), Query Frame = 1
Query:   43 MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT--RASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDYDSKR 471
            M S+WR  +GQ     DY+  EFWSNPERSGWLTKQG+YIKTWRRRWFVLK+GKL WFK+      R S PRGVI V  CLTVKGAEDV+NK +AFELS+ + TM+FIAD+EKEKE+WINSIGRSIVQHSRSVTDSE++DYD +R
Sbjct:    1 MESIWRIATGQDPSREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKDQAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWINSIGRSIVQHSRSVTDSEVLDYDHRR 145          
BLAST of FC932194 vs. ExPASy Swiss-Prot
Match: Y4775_DICDI (PH domain-containing protein DDB_G0274775 OS=Dictyostelium discoideum GN=DDB_G0274775 PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 1
Query:  124 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV-LNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 414
            +R GWLTKQG  I+TWRRRWFVLK  KLF+FK      A+   G+I +     VK  +D    K+Y F + T     Y  A++E + + W+ SI R++
Sbjct:   17 DREGWLTKQGGSIRTWRRRWFVLKGKKLFYFKSKGDIEAT---GLIELEQNSFVKEEKDKDKKKKYMFTVGTSKRVFYIFAETETDMKQWMESIKRNL 111          
BLAST of FC932194 vs. ExPASy Swiss-Prot
Match: CYH3_MOUSE (Cytohesin-3 OS=Mus musculus GN=Cyth3 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 47/128 (36.72%), Postives = 69/128 (53.91%), Query Frame = 1
Query:   97 DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRSI 414
            D T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE           +Y I A S +EKE+W+ SI  SI
Sbjct:  257 DLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVEDP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 379          
BLAST of FC932194 vs. ExPASy Swiss-Prot
Match: PKHH1_HUMAN (Pleckstrin homology domain-containing family H member 1 OS=Homo sapiens GN=PLEKHH1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.580e-11
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  124 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE-STVTRASKPRGVIPVAS-CLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWI 393
            E+SG+L K G  +KTW+RRWFVL+QG++ ++K  S V R  KP+G + + S C  V+G          F+L +  +T Y  ADS    E+WI
Sbjct:  580 EKSGYLLKMGSQVKTWKRRWFVLRQGQIMYYKSPSDVIR--KPQGQVDLNSRCQIVRG-----EGSQTFQLISEKKTYYLTADSPSLLEEWI 664          
BLAST of FC932194 vs. ExPASy Swiss-Prot
Match: CYH2_CERAE (Cytohesin-2 OS=Cercopithecus aethiops GN=CYTH2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 1
Query:   97 DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTET----------MYFI-ADSEKEKEDWINSIGRSI 414
            D T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  +D   K   FEL           + +TE           +Y I A +++EK++WI SI  ++
Sbjct:  252 DLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVDDP-RKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQAAV 374          
The following BLAST results are available for this feature:
BLAST of FC932194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PH1_ARATH5.522e-5771.03Pleckstrin homology domain-containing protein 1 OS... [more]
Y4775_DICDI9.860e-1441.84PH domain-containing protein DDB_G0274775 OS=Dicty... [more]
CYH3_MOUSE1.205e-1136.72Cytohesin-3 OS=Mus musculus GN=Cyth3 PE=1 SV=1[more]
PKHH1_HUMAN4.580e-1141.30Pleckstrin homology domain-containing family H mem... [more]
CYH2_CERAE7.813e-1133.59Cytohesin-2 OS=Cercopithecus aethiops GN=CYTH2 PE=... [more]
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Properties
Property NameValue
Genbank descriptionC34205F06EF PostHarveN Citrus clementina cDNA clone C34205F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932194 ID=FC932194; Name=FC932194; organism=Citrus clementina; type=EST; length=674bp
AGAAAACGATTCAATTTGAAGCCAGCAAGTGATTTGACACAAATGGGTAG
CCTCTGGCGAGCCATATCGGGCCAAACAAACCAGCTCAGCGACTACGACA
GCACTGAGTTCTGGTCAAACCCCGAACGGTCCGGCTGGTTGACCAAACAA
GGCGAGTACATAAAAACTTGGCGTCGCCGTTGGTTCGTTTTAAAACAAGG
CAAGCTCTTTTGGTTCAAAGAATCTACTGTCACCCGCGCCTCCAAGCCAC
GTGGCGTTATTCCAGTGGCCTCCTGCCTCACCGTCAAGGGAGCCGAAGAT
GTGTTGAATAAACAGTACGCTTTTGAGCTGAGTACGAGGACTGAGACGAT
GTACTTCATCGCTGATTCCGAGAAGGAGAAAGAGGACTGGATCAACTCCA
TCGGACGCTCCATAGTGCAGCACTCCAGGTCGGTTACTGATTCCGAGATC
GTTGATTACGATAGCAAGCGGTGATGACGATTGATGATAAACTACAGGTT
TGAATCATTTGTGCCACGTGGCAACGTGTGGTGAATAATTCCTTGTTTGC
TTTGTATATTGTGATGCTTAAATTAGTGTGTATTAGTTTGTTAGGGCTTC
CGCGGTGTATGTTCTGATGCTTACTTTGCCACATGAAAATGCTTATAAAT
TTGAAATCATTTTTGGTTTTTGTC
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