FC932199

Overview
NameFC932199
Unique NameFC932199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1012 contig Ccv1_Contig1012:11..522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUM2_ARATH (Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 5.636e-51
Identity = 100/113 (88.50%), Postives = 106/113 (93.81%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 340
            SNGHFELNVFKP+IAS LLHS+RL+ DASASF KNCVRGI+ANRERISKLLHESLMLVTSLNPKIGYDNAAAVAK+AHKEG TLK AA+KLGVL SEEFD LVVPEKMIGPSD
Sbjct:  387 SNGHFELNVFKPVIASALLHSIRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKRAHKEGCTLKHAAMKLGVLTSEEFDTLVVPEKMIGPSD 499          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUM1_ARATH (Fumarate hydratase 1, mitochondrial OS=Arabidopsis thaliana GN=FUM1 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 7.361e-51
Identity = 100/113 (88.50%), Postives = 106/113 (93.81%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 340
            SNGHFELNVFKP+IAS LLHS+RL+ DASASF KNCVRGI+ANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEG TLK+AAL LGVL +EEFD LVVPEKMIGPSD
Sbjct:  380 SNGHFELNVFKPVIASALLHSVRLIADASASFEKNCVRGIEANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGCTLKEAALNLGVLTAEEFDTLVVPEKMIGPSD 492          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMH_MOUSE (Fumarate hydratase, mitochondrial OS=Mus musculus GN=Fh PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 5.471e-38
Identity = 75/111 (67.57%), Postives = 91/111 (81.98%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            SNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct:  396 SNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 506          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMH_MACFA (Fumarate hydratase, mitochondrial OS=Macaca fascicularis GN=FH PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.471e-38
Identity = 75/111 (67.57%), Postives = 91/111 (81.98%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            SNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct:  399 SNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 509          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMH_HUMAN (Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 5.471e-38
Identity = 75/111 (67.57%), Postives = 91/111 (81.98%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            SNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+GP
Sbjct:  399 SNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGP 509          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMH_DANRE (Fumarate hydratase, mitochondrial OS=Danio rerio GN=fh PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 9.333e-38
Identity = 76/111 (68.47%), Postives = 90/111 (81.08%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            SNGHFELNVFKPMI   +L+S RLLGDAS SF  NCV GI+AN ERI+KL+ ESLMLVT+LNP IGYD AA +AK AHK+G+TLK+AALKLG LN ++F+  V P  M+GP
Sbjct:  398 SNGHFELNVFKPMIIKNVLNSARLLGDASVSFTNNCVVGIEANTERINKLMSESLMLVTALNPHIGYDKAAKIAKTAHKDGSTLKEAALKLGFLNEQQFEEWVRPHDMLGP 508          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMH_RAT (Fumarate hydratase, mitochondrial OS=Rattus norvegicus GN=Fh PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.219e-37
Identity = 75/111 (67.57%), Postives = 90/111 (81.08%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            SNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK  A++LG L +E+FD  V P+ M+GP
Sbjct:  396 SNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKKTAIELGYLTAEQFDEWVKPKDMLGP 506          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMH_PIG (Fumarate hydratase, mitochondrial OS=Sus scrofa GN=FH PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.049e-37
Identity = 74/111 (66.67%), Postives = 89/111 (80.18%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGP 334
            SNGHFELNVFKPM+   +LHS RLLGDA+ SF +NCV GIQAN ERI+KL++ESLMLVT+LNP IGYD AA +AK AHK G+TLK  A++LG L +E+FD  V P  M+GP
Sbjct:  355 SNGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPRDMLGP 465          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMH_RHIOR (Fumarate hydratase, mitochondrial OS=Rhizopus oryzae GN=FUMR PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.002e-36
Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD 340
            SNG FELNVFKP++   L+ S+RL+ DAS SF KNCV GI+AN ++IS +++ESLMLVT+LNP IGYD AA  AKKAHKEGTTLK+AAL LG L SEEFD  V PE MI   D
Sbjct:  382 SNGQFELNVFKPVMIKNLIQSIRLISDASISFTKNCVVGIEANEKKISSIMNESLMLVTALNPHIGYDKAAKCAKKAHKEGTTLKEAALSLGYLTSEEFDQWVRPEDMISAKD 494          
BLAST of FC932199 vs. ExPASy Swiss-Prot
Match: FUMH_DICDI (Fumarate hydratase, mitochondrial OS=Dictyostelium discoideum GN=fumH PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.141e-35
Identity = 75/110 (68.18%), Postives = 86/110 (78.18%), Query Frame = 2
Query:    2 SNGHFELNVFKPMIASGLLHSLRLLGDASASFVKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 331
            SNGHFELNVFKP+I   +L S+RL+ DAS SF K+CV GI+A+ +RI +LLHESLMLVT+LNP IGYD AA  AKKAHKE TTLK+A L LG   SEEFD  V P KMIG
Sbjct:  373 SNGHFELNVFKPVIIKNVLSSIRLIADASVSFTKHCVVGIKADEKRIDQLLHESLMLVTALNPYIGYDKAAKAAKKAHKEKTTLKEACLSLGFTTSEEFDKWVDPSKMIG 482          
The following BLAST results are available for this feature:
BLAST of FC932199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FUM2_ARATH5.636e-5188.50Fumarate hydratase 2, chloroplastic OS=Arabidopsis... [more]
FUM1_ARATH7.361e-5188.50Fumarate hydratase 1, mitochondrial OS=Arabidopsis... [more]
FUMH_MOUSE5.471e-3867.57Fumarate hydratase, mitochondrial OS=Mus musculus ... [more]
FUMH_MACFA5.471e-3867.57Fumarate hydratase, mitochondrial OS=Macaca fascic... [more]
FUMH_HUMAN5.471e-3867.57Fumarate hydratase, mitochondrial OS=Homo sapiens ... [more]
FUMH_DANRE9.333e-3868.47Fumarate hydratase, mitochondrial OS=Danio rerio G... [more]
FUMH_RAT1.219e-3767.57Fumarate hydratase, mitochondrial OS=Rattus norveg... [more]
FUMH_PIG6.049e-3766.67Fumarate hydratase, mitochondrial OS=Sus scrofa GN... [more]
FUMH_RHIOR3.002e-3666.37Fumarate hydratase, mitochondrial OS=Rhizopus oryz... [more]
FUMH_DICDI1.141e-3568.18Fumarate hydratase, mitochondrial OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC34205F11EF PostHarveN Citrus clementina cDNA clone C34205F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932199 ID=FC932199; Name=FC932199; organism=Citrus clementina; type=EST; length=512bp
ATCAAATGGCCATTTTGAACTAAATGTATTCAAGCCAATGATTGCTAGTG
GTCTCCTACATTCACTGAGATTGCTGGGAGATGCATCTGCTTCTTTTGTG
AAGAACTGTGTGAGAGGAATTCAAGCTAATAGGGAAAGGATTTCCAAATT
GCTGCACGAGTCATTGATGCTTGTCACATCCTTGAATCCTAAAATTGGTT
ATGACAATGCTGCGGCAGTTGCCAAGAAGGCTCACAAGGAGGGAACTACA
CTTAAGGATGCTGCATTGAAACTCGGAGTACTCAATAGTGAAGAATTTGA
TAATCTTGTGGTACCTGAGAAAATGATTGGCCCATCCGACTAACCAGCTT
ATGTGGGTTAAACTCCTGGGATTTGCTTTTGGCTTTTGTATCATTTTGCG
GGATATCTGTTTCTGCGCCGTTTCTCTCCCTCAAGGCCTCAACTGAATCA
CTTGATAGGGATCCAAATAGTGATTTTGCTTTTATTTAAAAAAAACAAAG
AAAGGGGCAACC
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