FC932201

Overview
NameFC932201
Unique NameFC932201
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15130 contig Ccv1_Contig15130:189..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 3.894e-29
Identity = 58/63 (92.06%), Postives = 63/63 (100.00%), Query Frame = 2
Query:    5 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 193
            IDVPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:   35 IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.894e-29
Identity = 58/63 (92.06%), Postives = 63/63 (100.00%), Query Frame = 2
Query:    5 IDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 193
            IDVPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:   35 IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS10_ORYSJ (40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 2
Query:    2 EIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 193
            +IDVPNLQVIKLMQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P
Sbjct:   34 QIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97          
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 2
Query:   11 VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 193
            VPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKK  KP
Sbjct:   38 VPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98          
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS10_SPOFR (40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.304e-20
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:   11 VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 190
            +PNLQVIK MQS KSR YV+E FAW H+YWYLTN+GIE+LR +L+LP EIVPATLK+S +
Sbjct:   38 IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 97          
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS10_LUMRU (40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.256e-19
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 2
Query:    2 EIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 193
            EIDVPNL VI+ MQS  SR YV+E F W HYYWYL N+GI++LR +L+LP EIVPATLK+  +P
Sbjct:   34 EIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRP 97          
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS10_RAT (40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.771e-19
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 2
Query:    8 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 184
            +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:   39 NVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS10_MOUSE (40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.771e-19
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 2
Query:    8 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 184
            +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:   39 NVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS10_HUMAN (40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.771e-19
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 2
Query:    8 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 184
            +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:   39 NVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of FC932201 vs. ExPASy Swiss-Prot
Match: RS10_BOVIN (40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.771e-19
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 2
Query:    8 DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 184
            +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:   39 NVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
The following BLAST results are available for this feature:
BLAST of FC932201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS103_ARATH3.894e-2992.0640S ribosomal protein S10-3 OS=Arabidopsis thalian... [more]
RS101_ARATH3.894e-2992.0640S ribosomal protein S10-1 OS=Arabidopsis thalian... [more]
RS10_ORYSJ2.137e-2787.5040S ribosomal protein S10 OS=Oryza sativa subsp. j... [more]
RS102_ARATH4.760e-2790.1640S ribosomal protein S10-2 OS=Arabidopsis thalian... [more]
RS10_SPOFR3.304e-2071.6740S ribosomal protein S10 OS=Spodoptera frugiperda... [more]
RS10_LUMRU1.256e-1965.6340S ribosomal protein S10 OS=Lumbricus rubellus GN... [more]
RS10_RAT4.771e-1969.4940S ribosomal protein S10 OS=Rattus norvegicus GN=... [more]
RS10_MOUSE4.771e-1969.4940S ribosomal protein S10 OS=Mus musculus GN=Rps10... [more]
RS10_HUMAN4.771e-1969.4940S ribosomal protein S10 OS=Homo sapiens GN=RPS10... [more]
RS10_BOVIN4.771e-1969.4940S ribosomal protein S10 OS=Bos taurus GN=RPS10 P... [more]

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Properties
Property NameValue
Genbank descriptionC34205G01EF PostHarveN Citrus clementina cDNA clone C34205G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932201 ID=FC932201; Name=FC932201; organism=Citrus clementina; type=EST; length=598bp
AGAAATCGATGTTCCAAACCTGCAGGTGATTAAGCTGATGCAGAGCTTCA
AATCTAGGGAGTATGTTCGTGAGACATTTGCGTGGATGCACTATTATTGG
TACCTTACGAATGATGGGATTGAGTTTTTGAGGACTTACCTCAATCTTCC
ATCAGAAATTGTTCCTGCTACCTTGAAGAAATCCGCTAAGCCAGCTGGTC
GCCCGATGGGTGGACCTGGTGGTGATCGTCCAAGGGGCCCACCTCGTTTT
GATGGAGACCGACCGAGGTTTGGTGACCGTGAAGGGTACCGTGGTGGTCC
TCGTGGTGGTGACTTTGGTGGTGAGAAAGGTGGAGCCCCTGCTGATTTCC
AGCCATCCTTCAGGGGTTCTGGTGGAAGACCTGGTTTTGGTCGCGGAGGT
GGAGGCTATGGTGCAGCTCCATCAGGTTCAGGATTTCCTTGAAGTTAAGG
CCGGTTTGCTTAGTTCATGTTTGCCCCAAATTAGTGTTTCAAGTCTTTAG
AACAAGTCTAATGCCTTTGTTGAATTTTCTATAGTATTTCTGTAAGCTTT
AAAGTACAATATTAAGTTCATTATGAGATCTTCAGTTTTTCCTCAAAA
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