FC932202

Overview
NameFC932202
Unique NameFC932202
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6_YEAST (40S ribosomal protein S6 OS=Saccharomyces cerevisiae GN=RPS6A PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.136e-33
Identity = 75/120 (62.50%), Postives = 89/120 (74.17%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVTKEGKQDYTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKRDELRKRRASSMR 362
            GE EL GLTDT VPKRLGPKRA  IR+FFGL K+DDVR FVIRR VTK G++ YTKAPKIQRLVTPQRL              +  R+AA +YA+LLA R+ E KA++ E+RKRRASS++
Sbjct:  117 GEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFVIRREVTK-GEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSLK 235          
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6_DEBHA (40S ribosomal protein S6 OS=Debaryomyces hansenii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.157e-31
Identity = 70/120 (58.33%), Postives = 87/120 (72.50%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVTKEGKQDYTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKRDELRKRRASSMR 362
            G+ ++ GLTDT  PKRLGPKRA  IR+FFGL K+DDVR+FV+RR V K G + YTKAPKIQRLVTPQ L              +  RDAA +YA+LLA R+HE KA+R E++KRRASS++
Sbjct:  117 GDSDIEGLTDTTTPKRLGPKRANNIRKFFGLTKEDDVRQFVVRREVVK-GDKKYTKAPKIQRLVTPQTLQRKRALKAQKVKNAQQQRDAAAEYAQLLAQRLHERKAERAEIKKRRASSLK 235          
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6_CANGA (40S ribosomal protein S6 OS=Candida glabrata GN=RPS6A PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.578e-31
Identity = 73/120 (60.83%), Postives = 87/120 (72.50%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVTKEGKQDYTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKRDELRKRRASSMR 362
            GE EL G+TD  VPKRLGPKRA  IR+FFGL K+DDVR FVIRR VTK G++ YTKAPKIQRLVTPQRL              +  R+AA +YA+LLA R+ E KA++ E RKRRASS++
Sbjct:  117 GEQELEGVTDATVPKRLGPKRANHIRKFFGLTKEDDVRDFVIRREVTK-GEKTYTKAPKIQRLVTPQRLQRKRYQRNLKVRNAQAQREAAAEYAQLLAKRLAERKAEKAETRKRRASSLK 235          
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6B_SCHPO (40S ribosomal protein S6-B OS=Schizosaccharomyces pombe GN=rps6b PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.796e-31
Identity = 71/123 (57.72%), Postives = 88/123 (71.54%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVT--KEGKQDYTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKRDELRKRRASSMRK 365
            GE ++PGLTD  VPKRLGPKRA+KIRRFF L K+DDVR+FVIRR V   KEGK+ YTKAPKIQRLVTP+ L              E  R+ A ++A+L+A RV E K K++ ++ RRASSM+K
Sbjct:  117 GEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKEVVKARRASSMKK 239          
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6A_SCHPO (40S ribosomal protein S6-A OS=Schizosaccharomyces pombe GN=rps6a PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.796e-31
Identity = 71/123 (57.72%), Postives = 88/123 (71.54%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVT--KEGKQDYTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKRDELRKRRASSMRK 365
            GE ++PGLTD  VPKRLGPKRA+KIRRFF L K+DDVR+FVIRR V   KEGK+ YTKAPKIQRLVTP+ L              E  R+ A ++A+L+A RV E K KR+ ++ RRASS++K
Sbjct:  117 GEQDIPGLTDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGKKPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKREVVKARRASSLKK 239          
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6_KLULA (40S ribosomal protein S6 OS=Kluyveromyces lactis GN=RPS6 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 70/120 (58.33%), Postives = 87/120 (72.50%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVTKEGKQDYTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKRDELRKRRASSMR 362
            GE E+ G+T+  VPKRLGPKRA  IR+FFGL K+DDVR +VIRR VTK G + YTKAPKIQRLVTPQRL              +  R+AA +YA+LLA R+ E KA++ E+RKRRASS++
Sbjct:  117 GEQEIEGITNDTVPKRLGPKRANNIRKFFGLTKEDDVRDYVIRREVTK-GDKSYTKAPKIQRLVTPQRLQRKRQQKSLKIKNAQAQREAAAEYAQLLAKRLSERKAEKAEVRKRRASSLK 235          
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.020e-29
Identity = 69/120 (57.50%), Postives = 85/120 (70.83%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVTKEGKQDYTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKRDELRKRRASSMR 362
            G+ E+ G+T+  VPKRLGPKRA  IR+FFGL K DDVR FVIRR V K G + YTKAPKIQRLVTPQRL              +  R+AA +YA+LLA R+ E+KA++ E RKRRASS++
Sbjct:  117 GDQEIEGITNESVPKRLGPKRANNIRKFFGLTKDDDVRDFVIRREVVK-GDKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEKAEERKRRASSLK 235          
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6_ONCMY (40S ribosomal protein S6 OS=Oncorhynchus mykiss GN=rps6 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28
Identity = 66/127 (51.97%), Postives = 90/127 (70.87%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVTKEGKQDYTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKRDE--LRKRRASSMRK*TSR 377
            GE ++PGLTD+ VP+RLGPKRA+KIR+ F L K+DDVR++V+RR +TKEGK+  TKAP+IQRLVTP+ L              +  ++ A++YAKLLA R+ E K KR E   ++RR SS+R  TS+
Sbjct:  117 GEKDIPGLTDSTVPRRLGPKRASKIRKLFNLAKEDDVRQYVVRRPLTKEGKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSK 243          
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28
Identity = 66/127 (51.97%), Postives = 88/127 (69.29%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVTKEGKQDYTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKRDE--LRKRRASSMRK*TSR 377
            GE ++PGLTDT VP+RLGPKRA++IR+ F L K+DDVR++V+R+ + KEGK+  TKAPKIQRLVTP+ L              +  ++ A DYAKLLA R+ E K KR E   ++RR SS+R  TS+
Sbjct:  117 GEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSK 243          
BLAST of FC932202 vs. ExPASy Swiss-Prot
Match: RS6_KLUMA (40S ribosomal protein S6 OS=Kluyveromyces marxianus GN=RPS6 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.668e-28
Identity = 69/120 (57.50%), Postives = 86/120 (71.67%), Query Frame = 3
Query:    3 GEGELPGLTDTVVPKRLGPKRATKIRRFFGLDKKDDVRKFVIRRTVTKEGKQDYTKAPKIQRLVTPQRLXXXXXXXXXXXXXXETARDAANDYAKLLAGRVHEEKAKRDELRKRRASSMR 362
            G+ E+ G+T+  VPKRLGPKRA  IR+FFGL K+DDVR +VIRR VTK G++ YTKAPKIQRLVTPQRL              +  R+AA +YA+LLA R+ E KA   E+RKRRASS++
Sbjct:  117 GDQEIEGVTNETVPKRLGPKRANNIRKFFGLTKEDDVRDYVIRREVTK-GEKTYTKAPKIQRLVTPQRLQRKRQQKALKIKNAQAQREAAAEYAQLLAKRLAERKA---EVRKRRASSLK 232          
The following BLAST results are available for this feature:
BLAST of FC932202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_YEAST6.136e-3362.5040S ribosomal protein S6 OS=Saccharomyces cerevisi... [more]
RS6_DEBHA1.157e-3158.3340S ribosomal protein S6 OS=Debaryomyces hansenii ... [more]
RS6_CANGA2.578e-3160.8340S ribosomal protein S6 OS=Candida glabrata GN=RP... [more]
RS6B_SCHPO9.796e-3157.7240S ribosomal protein S6-B OS=Schizosaccharomyces ... [more]
RS6A_SCHPO9.796e-3157.7240S ribosomal protein S6-A OS=Schizosaccharomyces ... [more]
RS6_KLULA1.671e-3058.3340S ribosomal protein S6 OS=Kluyveromyces lactis G... [more]
RS6_ASHGO7.020e-2957.5040S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]
RS6_ONCMY1.564e-2851.9740S ribosomal protein S6 OS=Oncorhynchus mykiss GN... [more]
RS6_CHICK2.043e-2851.9740S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_KLUMA2.668e-2857.5040S ribosomal protein S6 OS=Kluyveromyces marxianu... [more]

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Properties
Property NameValue
Genbank descriptionC34205G02EF PostHarveN Citrus clementina cDNA clone C34205G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932202 ID=FC932202; Name=FC932202; organism=Citrus clementina; type=EST; length=714bp
AGGGCGAGGGTGAGCTCCCCGGTCTCACCGACACCGTTGTCCCCAAGCGT
CTCGGCCCCAAGCGTGCCACCAAGATCCGCCGCTTCTTCGGTCTCGACAA
GAAGGACGACGTTCGCAAGTTCGTCATCCGCCGTACCGTCACCAAGGAGG
GAAAGCAGGACTACACCAAGGCCCCCAAGATCCAGCGTCTGGTTACTCCC
CAGCGTCTCCAGCGCAAGCGCCAACGCGTTGCTATCAAGCGCCGCCGTGC
TGAGACTGCCCGCGATGCTGCTAACGACTACGCCAAGCTCCTTGCCGGCC
GTGTCCACGAGGAGAAGGCCAAGCGTGATGAGCTCCGCAAGCGGAGGGCT
TCCTCCATGCGGAAGTAAACTTCCAGACCCGCGGTTTTATGATTTCGTTC
TGCGGCGATGGGGTTTAATGAAGGAGCTTCACGTCTCTGGGATGATTTGA
GGGGAATTCACAAAAAAATGAATCACTCAGAGGCGCGGAGGATACATGTC
TGATAAAAAGAAAAGGGAACAAGAGAAGAGACGGGAAACAGGTTTCAAAA
CGTACAAAGCAGGCTGAGTGGTTGATACTCCCTTGTGTTTGGCTACAGTG
ATTTCGGGCCTTGGGAGTCGCATGCATACCCTGTGTTGACCTACCCTTTT
TGATGACCCTTTTTTTTGATGGAGTGCATGCAATTTCAATACTCAGTCCT
GTTAATGCTCAAAA
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