FC932209

Overview
NameFC932209
Unique NameFC932209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15523 contig Ccv1_Contig15523:2..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932209 vs. ExPASy Swiss-Prot
Match: AB5F_ARATH (ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 7.866e-97
Identity = 182/235 (77.45%), Postives = 194/235 (82.55%), Query Frame = 2
Query:    5 KQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 709
            K S  GAS ISSGVKLENI KSYKGVTVLKDVTWE              AGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFKEEMEI  KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELGF  +D DRLVASFS GWQMRMSLGKI            PTNHLDLDTIEWLEGYL KQDVPMVIISHDRAFL
Sbjct:   85 KSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFKEEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELGFAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDVPMVIISHDRAFL 319          
BLAST of FC932209 vs. ExPASy Swiss-Prot
Match: AB2F_ARATH (ABC transporter F family member 2 OS=Arabidopsis thaliana GN=ABCF2 PE=3 SV=2)

HSP 1 Score: 339.347 bits (869), Expect = 1.175e-92
Identity = 174/236 (73.73%), Postives = 194/236 (82.20%), Query Frame = 2
Query:    2 NKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 709
            +KQSN GASSISSGV+LENISKSY+G+TVLKDVTWE              AGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM +TV+EEFM  FKEEMEIA KLE +QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++ AK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKI            PTNHLDLDTIEWLEGYL KQDVPMVIISHDRAFL
Sbjct:   70 SKQSNNGASSISSGVRLENISKSYEGITVLKDVTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMGKTVKEEFMCTFKEEMEIARKLENLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSIHAKISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTIEWLEGYLIKQDVPMVIISHDRAFL 305          
BLAST of FC932209 vs. ExPASy Swiss-Prot
Match: YDIF_BACSU (Uncharacterized ABC transporter ATP-binding protein ydiF OS=Bacillus subtilis GN=ydiF PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.282e-22
Identity = 65/222 (29.28%), Postives = 115/222 (51.80%), Query Frame = 2
Query:   44 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 709
            +++  +SKS+   T+L ++  E              AGK+T L+IIAGQ   + G +IK K ++ + +L+Q   +    T++EE ++ F     +  ++  +++ + +A  D   +  ++  +D LQ++ +       +A V  ++  LGF+  D    V S S G + R++LGK+            PTNHLD+DT+ WLE YL      ++I+SHDR FL
Sbjct:    4 LQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKPK-DITMGYLAQHTGLDSKLTIKEELLTVFDHLKAMEKEMRAMEEKMAAA--DPGELESIMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLLTQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFL 222          
BLAST of FC932209 vs. ExPASy Swiss-Prot
Match: AB4F_ARATH (ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 68/229 (29.69%), Postives = 110/229 (48.03%), Query Frame = 2
Query:   44 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA-------VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 709
            + +E+ S S +G  +LK+ +                 GK+T L+++A ++ P          N+ +  + QE  V   ++     +SA +E +++  + E +QK+   A        DD D   +L + +D LQ     +  D  +A+ SK++  LGFT D   R   SFS GW+MR+SL +             PTNHLDL  + WLE YL +    +V++SHDR FL
Sbjct:  163 ITIESFSVSARGKELLKNASVRISHGKRYGLIGPNGMGKSTLLKLLAWRKIP-------VPKNIDVLLVEQEV-VGDEKSALNAVVSANEELVKLREEAEALQKSSSGADGENVDGEDDDDTGEKLAELYDRLQ----ILGSDAAEAQASKILAGLGFTKDMQVRATQSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFL 379          
BLAST of FC932209 vs. ExPASy Swiss-Prot
Match: YFMR_BACSU (Uncharacterized ABC transporter ATP-binding protein yfmR OS=Bacillus subtilis GN=yfmR PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.051e-17
Identity = 62/222 (27.93%), Postives = 103/222 (46.40%), Query Frame = 2
Query:   44 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 709
            +K EN+ K+Y   T+   +++                GK+T L++IAG E  + G + K+ S +++ FL Q+ E+   +TV E   S     M+   + E+    L    ++      LL      Q K  A N    +     ++ +LG   +D  + V   S G + R+++ K             PTNHLD +TIEWLEGYL +    +++++HDR FL
Sbjct:    4 LKAENLYKTYGDKTLFDHISFHIEENERIGLIGPNGTGKSTLLKVIAGLESIEEGEITKSGS-VQVEFLHQDPELPAGQTVLEHIYSGESAVMKTLREYEKALYELGKDPENEQRQKHLL----AAQAKMDANNAWDANTLAKTVLSKLG--VNDVTKPVNELSGGQKKRVAIAKNLIQPADLLILDEPTNHLDNETIEWLEGYLSQYPGAVMLVTHDRYFL 218          
BLAST of FC932209 vs. ExPASy Swiss-Prot
Match: YFMM_BACSU (Uncharacterized ABC transporter ATP-binding protein yfmM OS=Bacillus subtilis GN=yfmM PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 55/222 (24.77%), Postives = 105/222 (47.30%), Query Frame = 2
Query:   44 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 709
            + ++++S  +    +  +V++                GK+T + II G+ EPD G V  +K N+++ +L Q   +   +++R+    AF     +  ++  +   +  A  D D + +LL+E  ++Q      +   +D+KV ++   LG +    +R V   S G + ++ L K+            PTN+LD   IEWL+ YL + +   ++ISHD  FL
Sbjct:    4 LSVKDLSHGFGDRAIFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKVEWSK-NVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMNEIYNKMGEA--DPDELEKLLEEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDVTDLSGGQRTKVLLAKLLLEKPEILLLDEPTNYLDEQHIEWLKRYLQEYENAFILISHDIPFL 222          
BLAST of FC932209 vs. ExPASy Swiss-Prot
Match: TLRC_STRFR (Tylosin resistance ATP-binding protein tlrC OS=Streptomyces fradiae GN=tlrC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 63/228 (27.63%), Postives = 97/228 (42.54%), Query Frame = 2
Query:   26 SSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 709
            +S SS + L  ++K Y    VL  V+                AGK+T LR++AG+E PD+G V        + +L Q   +    TV++    A  E   +  +L R + AL  A  D  L   L   +  L  + +  +    DA+V   +  LG      DR + + S G + R++L               PTN LD   + WLE +L      +V ++HDR FL
Sbjct:    3 TSPSSQLSLHGVTKRYDDRVVLSQVSLAISPGEKAGIIGDNGAGKSTLLRLLAGEERPDAGEVTVIAPG-GVGYLPQTLGLPPRATVQDAIDLAMTELRVLEAELRRTEAALAEAATDEALQDALT-AYARLTEQYEVRDGYGADARVDAALHGLGLPGLPRDRRLGTLSGGERSRLALAATLASQPELLLLDEPTNDLDDRAVHWLEEHLSGHRGTVVTVTHDRVFL 228          
BLAST of FC932209 vs. ExPASy Swiss-Prot
Match: ABCF2_DICDI (ABC transporter F family member 2 OS=Dictyostelium discoideum GN=abcF2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 66/227 (29.07%), Postives = 103/227 (45.37%), Query Frame = 2
Query:   35 SSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD--TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 709
            S  VK+E ++ ++ G  +L D T E               GK+T  + +A +E P          ++ I  LS+E   S  RT  +  +   ++E++    LE  ++ LE    + +    L D ++ L+      NLD  T   + S+++  LGFT+    +     S GW+MR+SL K             PTNHLDL    WLE YL   D  ++IISH + FL
Sbjct:   50 SRDVKIEQVTLTFHGKELLSDTTVEINFGRRYGLIGQNGCGKSTFFQCLAVRELP-------IPEHIDIFHLSEEAHPS-ERTALQSVIDDAEKEVKRLEVLE--ERLLEEQGPESE---ELFDVYERLE------NLDPTTFVPRASEILIGLGFTSQTMLKKTKDLSGGWRMRVSLAKALFIKPTLLLLDEPTNHLDLGACVWLEDYLANYDRSLIIISHSQDFL 257          
BLAST of FC932209 vs. ExPASy Swiss-Prot
Match: YBP8_SCHPO (Uncharacterized ABC transporter ATP-binding protein C16H5.08c OS=Schizosaccharomyces pombe GN=SPBC16H5.08c PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 58/228 (25.44%), Postives = 105/228 (46.05%), Query Frame = 2
Query:   32 ISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD--LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 709
            +S  +K+++ + S+ G  ++++ T E              +GK+T L  +A ++       ++   ++    L+ E E S    V     SA  +  ++  ++E +     S  DD+D  L+    +E D        ++  T +AK + ++  LGFT +   +     S GW+MR++L +             PTNHLDL+ + WLE YL K D  +V+ SH + FL
Sbjct:   72 MSRDIKIDSYTLSFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFLESVAARD-------VEYPEHIDSYLLNAEAEPSDVNAVDYIIQSAKDKVQKLEAEIEEL-----STADDVDDVLLESKYEELD-------DMDPSTFEAKAAMILHGLGFTQEMMAKPTKDMSGGWRMRVALSRALFIKPSLLLLDEPTNHLDLEAVVWLENYLAKYDKILVVTSHSQDFL 280          
BLAST of FC932209 vs. ExPASy Swiss-Prot
Match: UUP_ECOLI (ABC transporter ATP-binding protein uup OS=Escherichia coli (strain K12) GN=uup PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 49/186 (26.34%), Postives = 99/186 (53.23%), Query Frame = 2
Query:  152 AGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 709
            AGK+T ++I+  ++  D G +I  + ++ +A L Q+   ++  +V +      +E+ E   +   + + + +     D   + L+E   +Q +    NL  L+ ++++++ +LG    D +  ++S S GW  + +LG+             PTNHLD++TI+WLEG+L   +  ++ ISHDR+F+
Sbjct:   40 AGKSTLMKILNREQGLDDGRIIY-EQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMN-----DPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGL---DPNVALSSLSGGWLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFI 216          
The following BLAST results are available for this feature:
BLAST of FC932209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
AB5F_ARATH7.866e-9777.45ABC transporter F family member 5 OS=Arabidopsis t... [more]
AB2F_ARATH1.175e-9273.73ABC transporter F family member 2 OS=Arabidopsis t... [more]
YDIF_BACSU1.282e-2229.28Uncharacterized ABC transporter ATP-binding protei... [more]
AB4F_ARATH1.733e-1929.69ABC transporter F family member 4 OS=Arabidopsis t... [more]
YFMR_BACSU8.051e-1727.93Uncharacterized ABC transporter ATP-binding protei... [more]
YFMM_BACSU5.218e-1624.77Uncharacterized ABC transporter ATP-binding protei... [more]
TLRC_STRFR4.418e-1527.63Tylosin resistance ATP-binding protein tlrC OS=Str... [more]
ABCF2_DICDI9.841e-1529.07ABC transporter F family member 2 OS=Dictyostelium... [more]
YBP8_SCHPO1.679e-1425.44Uncharacterized ABC transporter ATP-binding protei... [more]
UUP_ECOLI2.192e-1426.34ABC transporter ATP-binding protein uup OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionC34205G09EF PostHarveN Citrus clementina cDNA clone C34205G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932209 ID=FC932209; Name=FC932209; organism=Citrus clementina; type=EST; length=713bp
CAACAAGCAATCAAACACGGGGGCTTCCAGTATTTCATCTGGGGTAAAGT
TAGAAAACATAAGCAAGAGCTACAAAGGAGTGACTGTATTGAAAGACGTG
ACATGGGAAGTGAAAAAGGGCGAGAAAGTTGGCTTAGTGGGCGTTAATGG
AGCGGGGAAAACGACCCAGTTGAGAATTATCGCAGGGCAAGAGGAACCCG
ATTCGGGGAATGTGATAAAGGCGAAGAGTAATATGAAAATTGCGTTCTTG
AGCCAAGAATTCGAGGTTTCAATGAGCAGAACGGTAAGAGAAGAGTTTAT
GAGTGCGTTTAAAGAGGAAATGGAGATTGCTGGGAAGTTGGAGAGAGTGC
AAAAGGCTTTAGAAAGTGCTGTTGATGATATGGATTTGATGGGGAGACTT
TTGGATGAGTTTGATTTGTTGCAGAGGAAAGCACAGGCTGTGAATTTGGA
TACGTTGGATGCTAAGGTTAGTAAGTTGATGCCGGAGCTAGGATTTACGG
CTGACGATGGAGATAGGTTGGTGGCATCGTTTAGTAGTGGGTGGCAGATG
AGAATGTCGCTCGGGAAGATTTTGTTGCAGGATCCAGATTTATTGCTTCT
GGATGTGCCTACAAATCACCTTGATCTTGACACAATTGAGTGGCTTGAAG
GTTATCTCGGCAAGCAAGATGTGCCCATGGTTATCATATCTCACGACAGA
GCTTTTCTGATCA
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