FC932210

Overview
NameFC932210
Unique NameFC932210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15472 contig Ccv1_Contig15472:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932210 vs. ExPASy Swiss-Prot
Match: PCKA_CUCSA (Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis sativus GN=PCK PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.975e-48
Identity = 111/209 (53.11%), Postives = 133/209 (63.64%), Query Frame = 3
Query:   84 EMAENGEFSFTSRARS-TGRNGLPRIQT--NNKNKETLVCHDDSATPIKAKTIDELHSLQKKRSTPSTPIKSPLATATAPDGSFAVISXXXXXXXXXXXXXXXXXXXTRETGPKVVKGDPATPRKVDGQPSTHSFHCTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVG*DETTD 701
            E  +NGEFSF S   + TGR GLP+I T  N    E  +CHDDS TP++A+T++ LHSLQKKRSTP+TP+       T   G F+ +S                   TRETGPK+VKGDP   ++          H    P    N+SDSALK TH+LYN SPAELYEQA+KYEKGSFITS+GALATLSGAKTGRSP DKRV  D+TT+
Sbjct:    4 EGKDNGEFSFVSDGGAETGRRGLPKIHTEKNAPTTERDICHDDSTTPMRARTLEHLHSLQKKRSTPTTPL-------TDSQGVFSPVSEAERQKQQLISISASLASLTRETGPKLVKGDPEKKKEAHKASVLDHLHF-GEPIL--NLSDSALKSTHILYNPSPAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPIDKRVVKDDTTE 202          
BLAST of FC932210 vs. ExPASy Swiss-Prot
Match: PCKA_ARATH (Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.847e-45
Identity = 103/188 (54.79%), Postives = 121/188 (64.36%), Query Frame = 3
Query:  147 LPRIQTNNKNKETLVCHDDSATPIKAKTIDELHSLQKKRSTPSTPIKSPLATATAPDGSFAVISXXXXXXXXXXXXXXXXXXXTRETGPKVVKGDPATPRKVDGQPS---THSFHCTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVG*DETTD 701
            +P+I T    + + VCHDDS   + A TIDELHSLQKKRS P+TPI    A A      FA +S                   TRE+GPKVV+GDPA  +K DG  +    H  H +        +SDS+LKFTHVLYNLSPAELYEQA+KYEKGSFITS+GALATLSGAKTGR+PRDKRV  D TT+
Sbjct:   23 MPKITTGAAKRGSGVCHDDSGPTVNATTIDELHSLQKKRSAPTTPINQNAAAA------FAAVSEEERQKIQLQSISASLASLTRESGPKVVRGDPAE-KKTDGSTTPAYAHGQHHSIFSPATGAVSDSSLKFTHVLYNLSPAELYEQAIKYEKGSFITSNGALATLSGAKTGRAPRDKRVVRDATTE 203          
BLAST of FC932210 vs. ExPASy Swiss-Prot
Match: PCKA_MAIZE (Phosphoenolpyruvate carboxykinase [ATP] OS=Zea mays PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.940e-44
Identity = 110/196 (56.12%), Postives = 126/196 (64.29%), Query Frame = 3
Query:  141 NGLPRIQTNNKNKETL-VCHDDSATPIKAKTIDELHSLQKKRSTPSTPIKSPLATAT--APDGSFAV-ISXXXXXXXXXXXXXXXXXXXTRETGPKVVKGDPATPRKV--DGQPSTHSFHCT----STPTFDDNISDSALKFTHVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVG*DETT 698
            NGL RI+T  K K+   V +DDS+ P++A+TIDELHSLQ+KRS P+TP +S   T         FAV IS                   TRETGPKVVKGDPA   +    G PST   H      + P     +SDS+LKFTHVL NLSPAELYEQA+KYEKGSFITS+GALATLSGAKTGRSPRDKRV  DE T
Sbjct:    5 NGLARIETTGKKKQDNGVWYDDSSAPVRAQTIDELHSLQRKRSAPTTPNRSAPTTPIKGGAHSPFAVAISEEERHTQQMQSISASLASLTRETGPKVVKGDPAAKGEAAAQGAPSTPRAHQQHRHPAAPAIA--VSDSSLKFTHVLNNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPRDKRVVKDEVT 198          
BLAST of FC932210 vs. ExPASy Swiss-Prot
Match: PCKA2_UROPA (Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Urochloa panicoides GN=PCK2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 87/169 (51.48%), Postives = 101/169 (59.76%), Query Frame = 3
Query:  195 HD-DSATPIKAKTIDELHSLQKKRSTPSTPIKSPLATATAPDGSFAVISXXXXXXXXXXXXXXXXXXXTRETGPKVVKGDPATPRKVDGQPSTHSFHCTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVG*DETT 698
            HD DSA P+ A+TI+ELHSLQ+K +T +    SPL + +A   S A                       RE GP +VKGDP   +     P  H     +  T     SDS+LKFTHVLYNLSPAELYEQA   +K SFITS+GALATLSGAKTGRSPRDKRV  DETT
Sbjct:   14 HDSDSAAPVNAQTIEELHSLQRKAATTTKDGASPLQSISASLASLA-----------------------REYGPNLVKGDPEATKGAPPVPIKHQQPSAAAATIA--ASDSSLKFTHVLYNLSPAELYEQAFGQKKSSFITSTGALATLSGAKTGRSPRDKRVVKDETT 157          
BLAST of FC932210 vs. ExPASy Swiss-Prot
Match: PCKA1_UROPA (Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Urochloa panicoides GN=PCK1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.982e-31
Identity = 83/166 (50.00%), Postives = 99/166 (59.64%), Query Frame = 3
Query:  201 DSATPIKAKTIDELHSLQKKRSTPSTPIKSPLATATAPDGSFAVISXXXXXXXXXXXXXXXXXXXTRETGPKVVKGDPATPRKVDGQPSTHSFHCTSTPTFDDNISDSALKFTHVLYNLSPAELYEQAVKYEKGSFITSSGALATLSGAKTGRSPRDKRVG*DETT 698
            DSA P++A+TI+ELHSLQ+K +  +    SPL + +A   S A                       RE GP +VKGDP    +  G P     H  +        SDS+LKFTHVLYNLSPAELYEQA   +K SFITS+GALATLSGAKTGRSPRDKRV  D+TT
Sbjct:   17 DSAAPVRAQTIEELHSLQRKAAATAKDSASPLQSISASLASTA-----------------------REYGPNLVKGDP----EAKGAPPAPVKHQQAAAAAAIAASDSSLKFTHVLYNLSPAELYEQAFGQKKSSFITSTGALATLSGAKTGRSPRDKRVVKDDTT 155          
The following BLAST results are available for this feature:
BLAST of FC932210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PCKA_CUCSA3.975e-4853.11Phosphoenolpyruvate carboxykinase [ATP] OS=Cucumis... [more]
PCKA_ARATH1.847e-4554.79Phosphoenolpyruvate carboxykinase [ATP] OS=Arabido... [more]
PCKA_MAIZE5.940e-4456.12Phosphoenolpyruvate carboxykinase [ATP] OS=Zea may... [more]
PCKA2_UROPA6.161e-3351.48Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Uroch... [more]
PCKA1_UROPA1.982e-3150.00Phosphoenolpyruvate carboxykinase [ATP] 1 OS=Uroch... [more]
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Properties
Property NameValue
Genbank descriptionC34205G10EF PostHarveN Citrus clementina cDNA clone C34205G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932210 ID=FC932210; Name=FC932210; organism=Citrus clementina; type=EST; length=710bp
GATATAAATATATCTCAACATAAGACTAGGAAATTTTGTTCGTTCATCCT
TATCCTCGTTTTCAGAGAGAAAGAGAAACTGAAGAAATGGCTGAGAACGG
AGAGTTCAGTTTTACGAGCAGGGCTAGAAGCACAGGACGAAACGGGCTAC
CGAGAATCCAAACGAATAATAAAAATAAAGAAACGTTGGTGTGTCACGAT
GACAGCGCAACGCCGATAAAGGCAAAGACGATCGACGAGCTTCACTCTCT
TCAGAAGAAGAGATCGACACCCAGCACTCCCATCAAATCCCCTCTCGCCA
CGGCGACTGCACCCGACGGTTCATTTGCCGTCATCTCCGAAGAGGAACGC
CAAAGGCAGCAACTCCAGTCCATAAGTGCTTCGTTGGCATCTTTGACGAG
GGAGACAGGGCCAAAGGTGGTGAAAGGGGACCCGGCAACGCCTAGGAAGG
TAGATGGCCAGCCGTCCACGCACTCATTTCATTGTACATCGACTCCAACG
TTTGACGACAATATTAGCGACAGTGCACTCAAGTTTACACACGTCCTTTA
CAATCTTTCCCCTGCTGAGCTTTACGAGCAAGCCGTTAAGTACGAGAAGG
GGTCCTTTATTACGTCATCTGGAGCTTTAGCGACGCTATCAGGTGCAAAG
ACGGGACGCTCCCCGAGAGACAAGCGGGTGGGTTAGGACGAGACCACCGA
CGCGAGCTCT
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