FC932215

Overview
NameFC932215
Unique NameFC932215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932215_ssr47 microsatellite FC932215_ssr47:47..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7906 contig Ccv1_Contig7906:85..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 9.586e-92
Identity = 164/194 (84.54%), Postives = 173/194 (89.18%), Query Frame = 2
Query:   68 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEENL 649
            MVSGSGIC+KRVVVDARHHMLGRLASI AKELLNGQKVV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            YEGVP PYDK+KRMVIPDALKVLRLQ GHK+CLLGRL+SEVGWN+YDTI+ELE KRKER+ V YERKKQLNKLR KAEKVAEE L
Sbjct:    1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKL 194          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 4.758e-91
Identity = 160/194 (82.47%), Postives = 174/194 (89.69%), Query Frame = 2
Query:   68 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEENL 649
            MVSGSGICAKRVVVDARHHMLGRLAS+VAK+LLNGQ +V VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PYDK+KRMV+PDALKVLRLQ GHK+CLLGRL+SEVGWN+YDTI+ELE KRKER+Q  YERKKQL+KLRAKAEKVAEE L
Sbjct:    1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKL 194          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.060e-90
Identity = 162/194 (83.51%), Postives = 172/194 (88.66%), Query Frame = 2
Query:   68 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEENL 649
            MVSGSGICAKRVVVD RHHMLGRLAS  AKELLNGQ+VV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EG+P PYDK+KRMVIPDALKVLRLQ GHK+CLLGRL+SEVGWN+YDTI+ELE KRKERSQV YERKKQLNKLR KAEKVAEE L
Sbjct:    1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERL 194          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.384e-90
Identity = 163/194 (84.02%), Postives = 172/194 (88.66%), Query Frame = 2
Query:   68 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEENL 649
            MVSGSGIC+KRVVVDARHHM GRLASI+AKELLNGQ VV VRCEEIC+SGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAP+KIFWRTVRGMIPHKT            +EGVP PYDKVKRMVIPDALKVLRLQ GHK+CLLGRL+SEVGWN+YDTI+ELE KRKERSQ  YERKKQL KLRAKAEKVAEE L
Sbjct:    1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKL 194          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 7.109e-87
Identity = 159/194 (81.96%), Postives = 172/194 (88.66%), Query Frame = 2
Query:   68 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEENL 649
            MVSGSGI AKRVVVDARHHMLGRLASIVAKELLNGQKVV VR EEIC+SGGLVRQKMKY+RFLRKRMNTKPSHGPIH  AP+KIFWRTVRGMIPHKT            YEG+P P+DK KR+V+PDALKVLRLQKGHK+CLLG+L+SEVGWNYYDTI+ELEKKRKERSQV YERKKQLNKLR KAE+VA+E L
Sbjct:    1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKL 193          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.141e-83
Identity = 148/195 (75.90%), Postives = 171/195 (87.69%), Query Frame = 2
Query:   68 MVSGSGICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEENLA 652
            MVSGSGICAK VVVDARHHMLGRLASI+AKELL+GQ+VV VRCEEICMSGGLVRQKMKY+RFLRKRMNTKPSHGPIHFRAP++I WRT+RGMIPHKT            +EGVP PYD+ KRMVIPDALKVLRLQ GHK+CLLGRL+ EVGW+++DTI ELE+KRK ++QV+YER+KQL KLR+KA ++AE+ LA
Sbjct:    1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLA 195          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.017e-57
Identity = 110/177 (62.15%), Postives = 131/177 (74.01%), Query Frame = 2
Query:   95 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKA 625
            K VVVD R H+LGRLA+ +AKELLNGQ+VVAVR EEI +SG L R K+K+  FL+KRMNT P  GP HFR+PA+I WRT+RGMIPHKT            +EGVP PYDK+KRMVIP AL+VLRL+ G K C+LGRLA+EVGW + D +  LE+KRK +S   Y RKK L  LRAKA
Sbjct:    4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKA 180          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 215.698 bits (548), Expect = 1.888e-55
Identity = 104/183 (56.83%), Postives = 133/183 (72.68%), Query Frame = 2
Query:  101 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEENL 649
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K   LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+ +
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKI 189          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.888e-55
Identity = 104/183 (56.83%), Postives = 133/183 (72.68%), Query Frame = 2
Query:  101 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEENL 649
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K   LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+ +
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKI 189          
BLAST of FC932215 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 2.466e-55
Identity = 104/183 (56.83%), Postives = 133/183 (72.68%), Query Frame = 2
Query:  101 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALKVLRLQKGHKHCLLGRLASEVGWNYYDTIRELEKKRKERSQVAYERKKQLNKLRAKAEKVAEENL 649
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K   LGRLA EVGW Y      LE+KRKE++++ Y +KKQL +LR +AEK  E+ +
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKI 189          
The following BLAST results are available for this feature:
BLAST of FC932215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
R13A4_ARATH9.586e-9284.5460S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
R13A1_ARATH4.758e-9182.4760S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A3_ARATH1.060e-9083.5160S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]
R13A2_ARATH1.384e-9084.0260S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
RL13A_LUPLU7.109e-8781.9660S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_PICMA2.141e-8375.9060S ribosomal protein L13a OS=Picea mariana GN=RPL... [more]
RL13A_CYAPA2.017e-5762.1560S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_MACFA1.888e-5556.8360S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_HUMAN1.888e-5556.8360S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]
RL13A_PONAB2.466e-5556.8360S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionC34205H03EF PostHarveN Citrus clementina cDNA clone C34205H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932215 ID=FC932215; Name=FC932215; organism=Citrus clementina; type=EST; length=694bp
GGAGAGGGAGAGAGAGCAGAAGAGGGAGAGAAAAAGCCAACAAAATAGAG
AGAGAGGAACCCTAATAATGGTGTCGGGATCGGGAATCTGCGCGAAGCGA
GTGGTGGTGGACGCACGCCACCACATGCTGGGGCGGCTGGCGTCGATCGT
GGCCAAGGAGCTCCTCAACGGACAGAAAGTCGTCGCGGTCCGCTGCGAAG
AGATTTGCATGTCCGGCGGCCTCGTCCGCCAGAAAATGAAGTACATGCGG
TTCCTTCGCAAGCGCATGAACACCAAGCCTTCTCACGGTCCCATCCACTT
TCGCGCCCCTGCCAAGATCTTCTGGCGCACCGTCCGCGGGATGATACCGC
ATAAGACCAAGCGTGGAGCTGCAGCACTTGCTCGATTGAAGGCATATGAA
GGGGTCCCTGCACCTTATGACAAGGTGAAGAGAATGGTTATCCCCGACGC
TCTCAAGGTTTTGAGGCTTCAGAAGGGTCACAAGCACTGCTTGTTAGGTC
GCCTGGCATCTGAGGTTGGATGGAATTATTATGACACCATCAGGGAGCTT
GAGAAGAAGAGAAAGGAGAGGTCACAGGTGGCTTATGAGAGGAAGAAGCA
GCTCAACAAACTTAGGGCTAAGGCTGAGAAGGTTGCAGAAGAGAACTTGG
CTCTCAATTGGACATCCTTGCTCCTGTCAATATTGATCAGTTAG
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