FC932217

Overview
NameFC932217
Unique NameFC932217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14112 contig Ccv1_Contig14112:9..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932217 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 49/156 (31.41%), Postives = 69/156 (44.23%), Query Frame = 2 
Query:  200 KEDAPGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEVQHLMSG-----LDWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAI-AXXXXXXXXXXXXXFYGVPPPELADPTQAKAPVXAHFGELDNFVGFSDV 637
            K   PG++V+ EWWG++  + N      +    GF A  PD Y GK   +  +   LM+      +D   A+    ASV++LK       KKVGVTG+C GG L++               FYG+P     D    K P+     E D FV   +V
Sbjct:   22 KWGGPGVIVIHEWWGLESPLSNIKEICDRFAQEGFVAFAPDFYEGKYADNPDDAGKLMTDMFENRMDKVDAI--FKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDEV 175
The following BLAST results are available for this feature:
BLAST of FC932217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
USF_AQUPY3.059e-1131.41Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC34205H05EF PostHarveN Citrus clementina cDNA clone C34205H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932217 ID=FC932217; Name=FC932217; organism=Citrus clementina; type=EST; length=725bp
GACTGAGTAGATAATGCTAGCAGCTGCTTCGAGAATCTTGAGCAGATCAA
CTCCGCTTCTTAAGCCCTCTCTCGCAAGGACTCACTTTCCCGCCGGTTAT
CGCTTTGCAGTCAGATCAATGGCAGACTCTGCAGCTTCGCCCTTCAAGAA
AATCCAGATTCAGAGAGATGATTCTACTTTTGATGCATATGTGGTTGGCA
AAGAAGACGCCCCTGGGATTGTTGTAGTTCAGGAGTGGTGGGGTGTTGAT
TTTGAGATCAAGAACCATGCTGTCAAAATCTCCCAACTAAACCCTGGATT
CAAGGCACTTATACCAGATTTATATCGGGGAAAGGTTGGTTTGGATACTG
CTGAAGTACAGCACTTGATGAGTGGTCTTGATTGGCCAGGTGCTGTCAAG
GATATCCACGCTTCAGTTAATTGGCTTAAGGCAAATGGTTCCAAGAAGGT
TGGCGTGACTGGATATTGCATGGGAGGTGCTCTCGCTATTGCAAGTTCTG
TCTTAGTTCCTGAGGTTGATGTTGTTGTTTCATTTTATGGGGTTCCCCCA
CCTGAGCTCGCCGATCCTACCCAGGCTAAGGCACCTGTTNCAGCTCATTT
TGGGGAGCTTGACAATTTTGTTGGCTTTTCAGATGTGAAAACTGCCAAAG
CATTGGAGGAAAGCTGAAAGCATCTGGTGTTCCATATGAGTCATATTTAT
CTGGCANGCACATGCTTCATGACAT
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