FC932222

Overview
NameFC932222
Unique NameFC932222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15393 contig Ccv1_Contig15393:44..751. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.431e-90
Identity = 163/202 (80.69%), Postives = 177/202 (87.62%), Query Frame = 2
Query:   23 MSSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSKTKTQLAQFGY 628
            MSSFESVVVIDGKGHLLGRLAS VAKQLLNGQKIVVVRCEALNISGEFFRAKLKYH+YLRKMTR+NPTRGGPFHFRAPSRI YKA+RGM+PHKTARGAAALERLKVFEG+PPPYDKKK++VVPQALRVLRL+PGRK+CTVGRLS EVGWKY+DVVSRLEERRK K  AYYE            ++ A V+ KT   L +FGY
Sbjct:    1 MSSFESVVVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAKVNDKTAEALKEFGY 202          
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.464e-74
Identity = 141/202 (69.80%), Postives = 160/202 (79.21%), Query Frame = 2
Query:   23 MSSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSKTKTQLAQFGY 628
            MS F+ VVVID KGHLLGRLAS VAKQLL GQK+VVVRCE LNISG FFR KLKY AYLRK  R+NP+RG  FHFRAPSRI  KA+RGM+PHKTARG AALE L+  EGIPPP+DK+KRVVVP ALRVLRL+PGRKYCTVGRLS EVGWKY D+VS+LEERRKVKS A+Y+            +  ++V+ K    LA+FGY
Sbjct:    1 MSEFQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGA-FHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQKKIASAKAASSVNGK----LAEFGY 197          
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.217e-73
Identity = 140/202 (69.31%), Postives = 160/202 (79.21%), Query Frame = 2
Query:   23 MSSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSKTKTQLAQFGY 628
            MS F+ VVVID KGHLLGRLAS VAKQLL GQK+VVVRCE LNISG FFR KLKY AYLRK  R+NP+RG  FHFRAPSRI  KA+RGM+PHKTARG AALE L+  EGIPPP+DK+KRVVVP ALRVLRL+PGRKYCTVGRLS EVGWKY D+V++LEERRKVKS A+Y+            ++ + V+ K    L+QFGY
Sbjct:    1 MSEFQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGA-FHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFYQAKLAKQKKIASAKEASPVNQK----LSQFGY 197          
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 1.590e-73
Identity = 142/198 (71.72%), Postives = 159/198 (80.30%), Query Frame = 2
Query:   35 ESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSKTKTQLAQFGY 628
            + VVVID K HLLGRLAST+AKQ+LNGQKIVVVR EALNISGEFFR KLKYH +LRK T FN TRG PFHFRAPSRILYKAIRGM+ HKTARG AALERLK+FEGIPPPYDKKKRVVVPQALRVLRL+PGRKY T+G+LS  VGWKY+DVV++LE++RKV+S  YY                A+ +S    QLA FGY
Sbjct:    3 QPVVVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRG-PFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAAS-ESDVAKQLASFGY 198          
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 271.937 bits (694), Expect = 2.296e-72
Identity = 143/200 (71.50%), Postives = 155/200 (77.50%), Query Frame = 2
Query:   29 SFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSKTKTQLAQFGY 628
            S E VVVIDGKGHL+GRLAS VAKQLLNGQKIVVVR E LNISGEFFR KLKYH +LRK T FN TRG PFHFRAPSRI YKA+RGM+ HKTARG AALERLKVFEGIPPPYDKKKRVVVPQALRVLRL+PGRKY T+G+LS  VGWKY+DVV++LE +RKV S  YY                A  +S    QLA  GY
Sbjct:    2 SVEPVVVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRG-PFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATA-AESDVAKQLAALGY 199          
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.393e-69
Identity = 131/202 (64.85%), Postives = 158/202 (78.22%), Query Frame = 2
Query:   23 MSSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSKTKTQLAQFGY 628
            MS F+ +V+ID KGHL+GRLASTVAKQLL GQK+VVVRCE LNISG FFR KLKY AYLRK  R+NP+RG  FHFRAPSRI  KA+RGM+PHKT RG  AL+ L+  EGIPPP+DK+KR+VVP ALRVLRL+P RKYCT+GRLS EVGWKY+++VS+LEERRK+KS A+Y+            +  ++V+ K    LA FGY
Sbjct:    1 MSEFQKLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGA-FHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQAKSANQKHINVAKTKSSVNEK----LAVFGY 197          
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.636e-65
Identity = 115/167 (68.86%), Postives = 144/167 (86.23%), Query Frame = 2
Query:   32 FESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 532
            FE VVV+D +GHLLGRLA+T+AK+LLNGQ++V VR E +NISG  FR KLK+HA+L+K    NP RG PFHFR+P+RIL++ IRGM+PHKT RGAAALERLK FEG+PPPYDK KR+V+PQALRVLRL+PGRK+C +GRL+ EVGW++ D+V+RLEE+RK KS A+Y
Sbjct:    2 FEKVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRG-PFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFY 167          
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 8.183e-62
Identity = 112/164 (68.29%), Postives = 140/164 (85.37%), Query Frame = 2
Query:   41 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 532
            V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK    NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AALERLKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+  +GRL+HEVGWKYQ V + LEE+RK K+K +Y
Sbjct:    6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168          
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 1.823e-61
Identity = 111/164 (67.68%), Postives = 140/164 (85.37%), Query Frame = 2
Query:   41 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 532
            V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK    NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+  +GRL+HEVGWKYQ V + LEE+RK K+K +Y
Sbjct:    6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHY 168          
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.823e-61
Identity = 111/164 (67.68%), Postives = 140/164 (85.37%), Query Frame = 2
Query:   41 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 532
            V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK    NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+  +GRL+HEVGWKYQ V + LEE+RK K+K +Y
Sbjct:    6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168          
The following BLAST results are available for this feature:
BLAST of FC932222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RL16_NEUCR1.431e-9080.6960S ribosomal protein L16 OS=Neurospora crassa GN=... [more]
RL16A_SCHPO5.464e-7469.8060S ribosomal protein L16-A OS=Schizosaccharomyces... [more]
RL16B_SCHPO1.217e-7369.3160S ribosomal protein L16-B OS=Schizosaccharomyces... [more]
RL16B_YEAST1.590e-7371.7260S ribosomal protein L16-B OS=Saccharomyces cerev... [more]
RL16A_YEAST2.296e-7271.5060S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
RL16C_SCHPO1.393e-6964.8560S ribosomal protein L16-C OS=Schizosaccharomyces... [more]
RL13A_CYAPA4.636e-6568.8660S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_BOVIN8.183e-6268.2960S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_MACFA1.823e-6167.6860S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_HUMAN1.823e-6167.6860S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]

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Properties
Property NameValue
Genbank descriptionC34205H10EF PostHarveN Citrus clementina cDNA clone C34205H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932222 ID=FC932222; Name=FC932222; organism=Citrus clementina; type=EST; length=708bp
GACGGGACATTAGATCACCGGGATGTCCTCCTTCGAATCAGTGGTCGTCA
TCGACGGCAAAGGACACCTCCTCGGTCGTCTGGCCAGCACTGTCGCCAAG
CAGCTGCTCAACGGTCAGAAGATCGTCGTCGTGAGATGTGAGGCTCTCAA
CATCTCCGGCGAGTTCTTCCGCGCGAAGCTCAAGTACCACGCCTACCTTC
GCAAGATGACTCGTTTCAACCCCACCCGTGGTGGTCCCTTCCACTTCCGC
GCTCCTTCCCGTATCCTCTACAAGGCCATCCGCGGCATGATGCCCCACAA
GACCGCCCGTGGTGCCGCCGCTCTGGAGCGCCTCAAGGTCTTCGAGGGTA
TTCCCCCTCCCTACGACAAGAAGAAGCGTGTCGTTGTTCCCCAGGCTCTC
CGTGTCCTGCGTCTCCGCCCCGGTCGCAAGTACTGCACCGTCGGCCGTCT
CAGCCACGAGGTTGGCTGGAAGTACCAGGATGTTGTTTCCAGACTCGAGG
AGCGCAGAAAGGTCAAGAGCAAGGCCTACTACGAGCGCAAGAAGGCCGCT
CGCCGTGTCCTTGCCAAGGCCGAGCAGGGAGCGAACGTGGACAGCAAGAC
CAAGACCCAGCTTGCTCAGTTTGGCTACTAGATACCTTTAGCGTGGCTGG
TTGTTGTGTCGAGCGATGGTTCTGGGATGGAATCGCGGACGGTTTTTTTT
TCAGCGAA
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