FC932222
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1) HSP 1 Score: 332.413 bits (851), Expect = 1.431e-90 Identity = 163/202 (80.69%), Postives = 177/202 (87.62%), Query Frame = 2 Query: 23 MSSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSKTKTQLAQFGY 628 MSSFESVVVIDGKGHLLGRLAS VAKQLLNGQKIVVVRCEALNISGEFFRAKLKYH+YLRKMTR+NPTRGGPFHFRAPSRI YKA+RGM+PHKTARGAAALERLKVFEG+PPPYDKKK++VVPQALRVLRL+PGRK+CTVGRLS EVGWKY+DVVSRLEERRK K AYYE ++ A V+ KT L +FGY Sbjct: 1 MSSFESVVVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAKVNDKTAEALKEFGY 202
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 5.464e-74 Identity = 141/202 (69.80%), Postives = 160/202 (79.21%), Query Frame = 2 Query: 23 MSSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSKTKTQLAQFGY 628 MS F+ VVVID KGHLLGRLAS VAKQLL GQK+VVVRCE LNISG FFR KLKY AYLRK R+NP+RG FHFRAPSRI KA+RGM+PHKTARG AALE L+ EGIPPP+DK+KRVVVP ALRVLRL+PGRKYCTVGRLS EVGWKY D+VS+LEERRKVKS A+Y+ + ++V+ K LA+FGY Sbjct: 1 MSEFQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGA-FHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQKKIASAKAASSVNGK----LAEFGY 197
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL16B_SCHPO (60S ribosomal protein L16-B OS=Schizosaccharomyces pombe GN=rpl16b PE=1 SV=1) HSP 1 Score: 276.174 bits (705), Expect = 1.217e-73 Identity = 140/202 (69.31%), Postives = 160/202 (79.21%), Query Frame = 2 Query: 23 MSSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSKTKTQLAQFGY 628 MS F+ VVVID KGHLLGRLAS VAKQLL GQK+VVVRCE LNISG FFR KLKY AYLRK R+NP+RG FHFRAPSRI KA+RGM+PHKTARG AALE L+ EGIPPP+DK+KRVVVP ALRVLRL+PGRKYCTVGRLS EVGWKY D+V++LEERRKVKS A+Y+ ++ + V+ K L+QFGY Sbjct: 1 MSEFQKVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGA-FHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFYQAKLAKQKKIASAKEASPVNQK----LSQFGY 197
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3) HSP 1 Score: 275.789 bits (704), Expect = 1.590e-73 Identity = 142/198 (71.72%), Postives = 159/198 (80.30%), Query Frame = 2 Query: 35 ESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSKTKTQLAQFGY 628 + VVVID K HLLGRLAST+AKQ+LNGQKIVVVR EALNISGEFFR KLKYH +LRK T FN TRG PFHFRAPSRILYKAIRGM+ HKTARG AALERLK+FEGIPPPYDKKKRVVVPQALRVLRL+PGRKY T+G+LS VGWKY+DVV++LE++RKV+S YY A+ +S QLA FGY Sbjct: 3 QPVVVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRG-PFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSASAAAS-ESDVAKQLASFGY 198
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3) HSP 1 Score: 271.937 bits (694), Expect = 2.296e-72 Identity = 143/200 (71.50%), Postives = 155/200 (77.50%), Query Frame = 2 Query: 29 SFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSKTKTQLAQFGY 628 S E VVVIDGKGHL+GRLAS VAKQLLNGQKIVVVR E LNISGEFFR KLKYH +LRK T FN TRG PFHFRAPSRI YKA+RGM+ HKTARG AALERLKVFEGIPPPYDKKKRVVVPQALRVLRL+PGRKY T+G+LS VGWKY+DVV++LE +RKV S YY A +S QLA GY Sbjct: 2 SVEPVVVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRG-PFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATA-AESDVAKQLAALGY 199
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1) HSP 1 Score: 262.692 bits (670), Expect = 1.393e-69 Identity = 131/202 (64.85%), Postives = 158/202 (78.22%), Query Frame = 2 Query: 23 MSSFESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYEXXXXXXXXXXXXEQGANVDSKTKTQLAQFGY 628 MS F+ +V+ID KGHL+GRLASTVAKQLL GQK+VVVRCE LNISG FFR KLKY AYLRK R+NP+RG FHFRAPSRI KA+RGM+PHKT RG AL+ L+ EGIPPP+DK+KR+VVP ALRVLRL+P RKYCT+GRLS EVGWKY+++VS+LEERRK+KS A+Y+ + ++V+ K LA FGY Sbjct: 1 MSEFQKLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGA-FHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQAKSANQKHINVAKTKSSVNEK----LAVFGY 197
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 4.636e-65 Identity = 115/167 (68.86%), Postives = 144/167 (86.23%), Query Frame = 2 Query: 32 FESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 532 FE VVV+D +GHLLGRLA+T+AK+LLNGQ++V VR E +NISG FR KLK+HA+L+K NP RG PFHFR+P+RIL++ IRGM+PHKT RGAAALERLK FEG+PPPYDK KR+V+PQALRVLRL+PGRK+C +GRL+ EVGW++ D+V+RLEE+RK KS A+Y Sbjct: 2 FEKVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRG-PFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFY 167
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3) HSP 1 Score: 236.884 bits (603), Expect = 8.183e-62 Identity = 112/164 (68.29%), Postives = 140/164 (85.37%), Query Frame = 2 Query: 41 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 532 V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AALERLKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+ +GRL+HEVGWKYQ V + LEE+RK K+K +Y Sbjct: 6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3) HSP 1 Score: 235.728 bits (600), Expect = 1.823e-61 Identity = 111/164 (67.68%), Postives = 140/164 (85.37%), Query Frame = 2 Query: 41 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 532 V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+ +GRL+HEVGWKYQ V + LEE+RK K+K +Y Sbjct: 6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHY 168
BLAST of FC932222 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2) HSP 1 Score: 235.728 bits (600), Expect = 1.823e-61 Identity = 111/164 (67.68%), Postives = 140/164 (85.37%), Query Frame = 2 Query: 41 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 532 V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+ +GRL+HEVGWKYQ V + LEE+RK K+K +Y Sbjct: 6 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHY 168 The following BLAST results are available for this feature:
BLAST of FC932222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932222 ID=FC932222; Name=FC932222; organism=Citrus clementina; type=EST; length=708bpback to top |