FC932229

Overview
NameFC932229
Unique NameFC932229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10550 contig Ccv1_Contig10550:410..1109. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932229 vs. ExPASy Swiss-Prot
Match: PPCS_HUMAN (Phosphopantothenate--cysteine ligase OS=Homo sapiens GN=PPCS PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.131e-39
Identity = 88/187 (47.06%), Postives = 110/187 (58.82%), Query Frame = 2
Query:  155 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSE-----AVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEW 700
            RRV  VTSGGT VPLE R VR++DNFSSG RGA S E  +  GY V+FLYR  +  PY    P   +L     +  +   +    +E         A+R +  A A G  L + FTT+ +YL +LQ  A +   LGP +MFYLAAAVSDFYVP   M EHKIQS  GPL + +  VPK+LS L K+W
Sbjct:   35 RRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDW 221          
BLAST of FC932229 vs. ExPASy Swiss-Prot
Match: PPCS_MOUSE (Phosphopantothenate--cysteine ligase OS=Mus musculus GN=Ppcs PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.613e-39
Identity = 85/187 (45.45%), Postives = 112/187 (59.89%), Query Frame = 2
Query:  155 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEES-----AVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEW 700
            RRV  +TSGGT VPLE R VR++DNFSSG RGAAS E  +  GY V+FLYR  +  PY    P  A+L     +  +     +++  +        A++ +  A A G  L + FTT+ +YL +LQ  A++   LG  +MFYLAAAVSDFY+P   M EHKI S  GPL + +  VPKMLS L K+W
Sbjct:   35 RRVVLITSGGTKVPLEARAVRFLDNFSSGRRGAASAEVFLAAGYGVLFLYRARSAFPYAHRFPPQAWLSALRPSGPAQSGKLSLEAEENALPGFAAALQSYQEAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVSEMPEHKIHSSGGPLQITMKMVPKMLSPLVKDW 221          
BLAST of FC932229 vs. ExPASy Swiss-Prot
Match: YJ2I_SCHPO (Uncharacterized protein C4B3.18 OS=Schizosaccharomyces pombe GN=SPCC4B3.18 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.448e-36
Identity = 91/225 (40.44%), Postives = 130/225 (57.78%), Query Frame = 2
Query:   38 PLNSEIESFFDSVPPLNDRAAISEKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSL--PDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSG--PLDMQLLQVPKMLSVLRKEW 700
            P   +   FF+  P  N    +S  +++FI L   +S ++ +A VTSGGT VPLEQ  VR+IDNFS+G+RGAAS E+  K GY+VIFLYR  +  P+      P     E    ++E    V Q +   V  A+ +         L+ +P+TT+ EYL  L+ IA   + +   ++FYLAAAVSDF++P K ++EHKIQSGSG   L++++  VPK L  L   W
Sbjct:    2 PEMDKSNDFFEENPCPNSLGDVSSLIEDFINL---QSNSQNIAFVTSGGTLVPLEQNTVRFIDNFSAGNRGAASAEYFCKSGYSVIFLYRNYSLMPFTRRYEGPWTNLFERSNGSQEKPWIVKQEFQSTVFNALNELDTYTKHHRLIMIPYTTLTEYLWYLKAIAERLQIIASRALFYLAAAVSDFHIPPKELSEHKIQSGSGSNKLEVKMHPVPKFLRFLVDTW 223          
BLAST of FC932229 vs. ExPASy Swiss-Prot
Match: YII3_YEAST (Uncharacterized protein YIL083C OS=Saccharomyces cerevisiae GN=YIL083C PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27
Identity = 90/242 (37.19%), Postives = 126/242 (52.07%), Query Frame = 2
Query:   47 SEIESFFDSVPPLNDRAAISEKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLP---DDAFLECFEVTEESAVQVCQPYSEAV--KRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSG-------------------SGPLDMQLLQVPKMLSVLRKEW 700
            +E E +F + P       + +  KEFI L  S     ++  +TSGGTTVPLE   VR+IDNFS+G RGA+S E  +  GY+VIFL+R  +  PY  S     +  FL+      +S  ++   ++E V   + + D +      LLL LPFTT+ +YL  L+ IA    + G   +FYLAAAVSDF+VP+  + +HKIQSG                    G L + L  VPK L  L + W
Sbjct:   38 TEEEQYFKTNPKPAYIDELIKDAKEFIDLQYSLK-RNKIVLITSGGTTVPLENNTVRFIDNFSAGTRGASSAEQFLANGYSVIFLHREFSLTPYNRSFSHSINTLFLDYI----DSEGKIKPEFAENVLKNKKLYDKYMEKEEKLLL-LPFTTVNQYLWSLKSIAKLLNNSG--CLFYLAAAVSDFFVPYSRLPQHKIQSGDNGKMGANNDTEGTTRTTPDGKLIVNLDPVPKFLRRLVESW 271          
The following BLAST results are available for this feature:
BLAST of FC932229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PPCS_HUMAN1.131e-3947.06Phosphopantothenate--cysteine ligase OS=Homo sapie... [more]
PPCS_MOUSE5.613e-3945.45Phosphopantothenate--cysteine ligase OS=Mus muscul... [more]
YJ2I_SCHPO4.448e-3640.44Uncharacterized protein C4B3.18 OS=Schizosaccharom... [more]
YII3_YEAST4.929e-2737.19Uncharacterized protein YIL083C OS=Saccharomyces c... [more]
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Properties
Property NameValue
Genbank descriptionC34206A05EF PostHarveN Citrus clementina cDNA clone C34206A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932229 ID=FC932229; Name=FC932229; organism=Citrus clementina; type=EST; length=700bp
GACAACCGGGAAGGCAGGCAACCGAGAAATGGATTCGCCGCTGAACTCAG
AAATCGAATCATTTTTTGATTCGGTTCCGCCTCTCAATGACCGCGCCGCT
ATCAGCGAGAAATTGAAGGAATTCATTGCACTGAATTCGTCAGAATCAGG
AACAAGAAGAGTGGCGTGTGTGACATCTGGCGGCACAACTGTGCCACTGG
AGCAACGCTGTGTCCGTTATATTGATAATTTCAGCTCAGGCCACAGAGGA
GCTGCTTCTACTGAGCATTTAATTAAGATGGGATATGCTGTTATTTTCTT
GTACCGAAGGGGAACTTGCGAGCCATATTGCAGTTCTCTCCCTGATGATG
CGTTTCTTGAATGTTTTGAGGTCACTGAGGAGTCAGCAGTTCAAGTCTGC
CAACCTTATTCCGAAGCAGTGAAGAGAGCCATTAGGGATCATCACGCTGC
AGTAGCAGGAGGCCTTCTGTTGAAGCTTCCCTTTACAACTATATTCGAGT
ATCTTCAGATGCTACAGATGATTGCTGTATCTTCTAGGAGTCTTGGACCA
TGTTCTATGTTCTATCTTGCTGCTGCTGTTTCTGACTTCTATGTCCCATG
GAAAAGCATGGCAGAGCACAAGATTCAGTCAGGTTCTGGCCCTTTGGACA
TGCAACTTTTGCAGGTGCCAAAAATGCTCTCAGTTCTCAGGAAAGAATGG
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